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[学术文献 ] Gossypium purpurascens genome provides insight into the origin and domestication of upland cotton 进入全文
JOURNAL OF ADVANCED RESEARCH
Introduction: Allotetraploid upland cotton (Gossypium hirsutum L.) is native to the Mesoamerican and Caribbean regions, had been improved in the southern United States by the mid-eighteenth century, was then dispersed worldwide. However, a Hainan Island Native Cotton (HIC) has long been grown extensively on Hainan Island, China. Objectives: Explore HIC's evolutionary relationship and genomic diversity with other tetraploid cottons, its origin and whether it was used for YAZHOUBU (Yazhou cloth, World Intangible Cultural Heritage) weaving, and the role of structural variations (SVs) in upland cotton domestication. Methods: We assembled a high-quality genome of one HIC plant. We performed phylogenetic analysis, divergence time estimation, principal component analysis and population differentiation estimation using cotton assemblies and/or resequencing data. SVs were detected by whole-genome comparison. A F2 population was used for linkage analysis and to study effects of SVs. Buoyancy and salt water tolerance tests for seeds were conducted. Results: We found that the HIC belongs to G. purpurascens. G. purpurascens is best classified as a primitive race of G. hirsutum. The potential for long range transoceanic dispersal of G. purpurascens seeds was proved. A set of SVs, selective sweep regions between G. hirsutum races and cultivars, and quantitative trait loci (QTLs) of eleven agronomic traits were obtained. SVs, especially large-scale SVs, were found to have important effects on cotton domestication and improvement. Of them, eight large-scale inversions strongly associated with yield and fiber quality have probably undergone artificial selection in domestication. Conclusion: G. purpurascens including HIC is a primitive race of G. hirsutum, probably disperse to Hainan from Central America by floating on ocean currents, may have been partly domesticated, planted and was likely used for YAZHOUBU weaving in Hainan much earlier than the Pre-Columbian period. SV plays an important role in cotton domestication and improvement.
[学术文献 ] Enhanced phenylpropanoid metabolism underlies resistance to Fusarium oxysporum f. sp. vasinfectum race 4 infection in the cotton cultivar Pima-S6 (Gossypium barbadense L.) 进入全文
FRONTIERS IN GENETICS
Introduction: Fusarium oxysporum f. sp. vasinfectum (FOV) race 4 (FOV4) is a highly pathogenic soil-borne fungus responsible for Fusarium wilt in cotton (Gossypium spp.) and represents a continuing threat to cotton production in the southwest states of the United States, including California, New Mexico, and Texas. Pima (G. barbadense L.) cotton, which is highly valued for its fiber quality, has been shown to be more susceptible to this pathogen than Upland (G. hirsutum L.) cotton. Still, some Pima cultivars present resistance to FOV4 infection.Methods: To gain insights into the FOV4-resistance mechanism, we performed comparative transcriptional and metabolomic analyses between FOV4-susceptible and FOV4-resistant Pima cotton entries. FOV4-resistant Pima-S6 and FOV4-susceptible Pima S-7 and Pima 3-79 cotton plants were infected with FOV4 in the greenhouse, and the roots harvested 11 days post-infection for further analysis.Results: We found that an enhanced root phenylpropanoid metabolism in the resistant Pima-S6 cultivar determines FOV4-resistance. Gene-ontology enrichment of phenylpropanoid biosynthesis and metabolism categories correlated with the accumulation of secondary metabolites in Pima-S6 roots. Specifically, we found esculetin, a coumarin, an inhibitor of Fusarium's growth, accumulated in the roots of Pima-S6 even under non-infected conditions. Genes related to the phenylpropanoid biosynthesis and metabolism, including phenylalanine ammonia-lyase 2 (PAL2) and pleiotropic drug resistance 12 (PDR12) transporter, were found to be upregulated in Pima-S6 roots.Discussion: Our results highlight an essential role for the phenylpropanoid synthesis pathway in FOV4 resistance in Pima-S6 cotton. These genes represent attractive research prospects for FOV4-disease resistance and breeding approaches of other cotton cultivars of economic relevance.
[学术文献 ] GhWRKY41 forms a positive feedback regulation loop and increases cotton defence response against Verticillium dahliae by regulating phenylpropanoid metabolism 进入全文
PLANT BIOTECHNOLOGY JOURNAL
Despite the established significance of WRKY proteins and phenylpropanoid metabolism in plant immunity, how WRKY proteins modulate aspects of the phenylpropanoid pathway remains undetermined. To understand better the role of WRKY proteins in plant defence, we identified a cotton (Gossypium hirsutum) protein, GhWRKY41, that is, universally and rapidly induced in three disease-resistant cotton cultivars following inoculation with the plant pathogenic fungus, Verticillium dahliae. We show that overexpression of GhWRKY41 in transgenic cotton and Arabidopsis enhances resistance to V. dahliae, while knock-down increases cotton more susceptibility to the fungus. GhWRKY41 physically interacts with itself and directly activates its own transcription. A genome-wide chromatin immunoprecipitation and high-throughput sequencing (ChIP-seq), in combination with RNA sequencing (RNA-seq) analyses, revealed that 43.1% of GhWRKY41-binding genes were up-regulated in cotton upon inoculation with V. dahliae, including several phenylpropanoid metabolism master switches, receptor kinases, and disease resistance-related proteins. We also show that GhWRKY41 homodimer directly activates the expression of GhC4H and Gh4CL, thereby modulating the accumulation of lignin and flavonoids. This finding expands our understanding of WRKY-WRKY protein interactions and provides important insights into the regulation of the phenylpropanoid pathway in plant immune responses by a WRKY protein.
[学术文献 ] Genomic insights into local adaptation of upland cotton in China and Pakistan 进入全文
THEORETICAL AND APPLIED GENETICS
Key messageDifferent kinship and resistance to cotton leaf curl disease (CLCuD) and heat were found between upland cotton cultivars from China and Pakistan. 175 SNPs and 82 InDels loci related to yield, fiber quality, CLCuD, and heat resistance were identified. Elite alleles found in Pakistani accessions aided local adaptation to climatic condition of two countries.AbstractAdaptation of upland cotton (Gossypium hirsutum) beyond its center of origin is expected to be driven by tailoring of the genome and genes to enhance yield and quality in new ecological niches. Here, resequencing of 456 upland cotton accessions revealed two distinct kinships according to the associated country. Fiber quality and lint percentage were consistent across kinships, but resistance to cotton leaf curl disease (CLCuD) and heat was distinctly exhibited by accessions from Pakistan, illustrating highly local adaption. A total of 175 SNP and 82 InDel loci related to yield, fiber quality, CLCuD and heat resistance were identified; among them, only two overlapped between Pakistani and Chinese accessions underscoring the divergent domestication and improvement targets in each country. Loci associated with resistance alleles to leaf curl disease and high temperature were largely found in Pakistani accessions to counter these stresses prevalent in Pakistan. These results revealed that breeding activities led to the accumulation of unique alleles and helped upland cotton become adapted to the respective climatic conditions, which will contribute to elucidating the genetic mechanisms that underlie resilience traits and help develop climate-resilient cotton cultivars for use worldwide.
[学术文献 ] Drought response modelling of leaf photosynthetic parameters in two Gossypium species 进入全文
JOURNAL OF AGRONOMY AND CROP SCIENCE
Cotton is well adapted to dry areas, but progressive water deficits can lead to declines in net photosynthesis (A), ultimately reducing yield. However, the exact mechanism responsible for this decline in net photosynthesis (stomatal or non-stomatal) is not fully understood under field conditions, partially due to limitations in the ability to collect critical data. To our knowledge, no other study has compared the drought responses of Pima and upland cotton using both CO2 response and chlorophyll fluorescence under field conditions. To this end, a field study was conducted to quantify the impact of progressive mild drought, as measured by midday stomatal conductance to water vapour (g(s)), on cotton leaf metabolism in Pima and upland cotton. Survey gas exchange and rapid photosynthetic CO2 response (RACiR) were conducted during flowering on the same leaf. The study observed decline in A as g(s) declined for both species. Correlation analysis indicated typical relationships with A and parameters associated with stomatal limitations such as decreased CO2 inside the leaf and at the site of carboxylation; however, it was found that while Pima exhibited a strong relationship between maximum electron transport rate (J(max)) and electron transport rate (ETR), upland cotton did not. Furthermore, when ETR is broken down into proportions contributing to net photosynthesis and photorespiration (ETRA, ETRP, respectively), we found that a greater proportion of ETR is being shuttled to the photorespiratory pathway in upland, relative to Pima as g(s) decreases. Our results fill critical knowledge gaps that can be useful for modellers and breeders when preparing for future climate change scenarios.
[学术文献 ] Study of Ethiopian genetically modified and organic cotton fiber quality compared with conventional cotton 进入全文
COGENT FOOD & AGRICULTURE
In Ethiopia, investigation of fiber quality and commercialization is limited to conventional cotton and there is no fiber property analysis for Organic and genetically modified cotton. The objective of this study is to characterize organic and genetically modified cotton and compare them to conventional cotton varieties. Conventional varieties with chemically treated and untreated seed cotton; organic and genetically modified cotton samples were collected using random sampling methods from different regions of Ethiopia. Cotton fiber qualities are tested on High-Volume Instruments based on the ASTM standard. The tested data is experimentally designed and analyzed using SPSS software version 22. The model is significant for the effect of fiber quality parameters on the similar and different cotton varieties p < 0.05. The JKCH 1947 cotton has a maximum spinning consistency index, Uniformity index, and maturity ratio of 151, 86.6, and 0.83, respectively. The organic cotton cultivated MRC (270) has a maximum fiber strength of 29.29 g/tex and elongation of 7.44 mm, minimum short fiber content of 4, and maturity of 4. Deltapine (DP) 90 untreated seed Forgena cotton has a maximum micronaire value of 4.24 and a minimum fiber length of 27.17 mm. Acala SJ2 cotton variety has a maximum fiber length of 28.3 mm, minimum micronaire of 3.69, and elongation of 4.44 mm. It was revealed there is little improvement in qualities of the organic and genetically modified cotton. Chemical treatment has a significant effect on the quality of cotton. Cotton parameters have a significant effect on varieties with strong and weak correlations.
