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Data from: Post-glacial colonization of northern coastal habitat by bottlenose dolphins: a marine leading-edge expansion?
负责人:
关键词:
genetic diversity;multi-species coalescent;habitat modelling;phylogenetics;Population structure and phylogeography;Molecular systematics and phylogenetics;Last Glacial Maximum (LGM);time-dependency
DOI:
doi:10.5061/dryad.4j15t24
摘要:
brated phylogeny, constructed with 86 complete mitochondrial genomes including 30 generated for this study and created using a multi-species coalescent model
Data from: Genomic data detect corresponding signatures of population size change on an ecological time scale in two salamander species
负责人:
关键词:
genetic monitoring;temporal samples;Amphibian decline;Ambystoma opacum;Ambystoma talpoideum;Ambystoma;demographic inference;coalescent
DOI:
doi:10.5061/dryad.q74p1
摘要:
) and A. talpoideum (1984, 2011) and used coalescent-based demographic inference to compare alternate evolutionary models. For both species, demographic model inference
Data from: Robustness to divergence time underestimation when inferring species trees from estimated gene trees
负责人:
关键词:
Robinson-Foulds;false negative;statistical consistency;maximum likelihood;Bayesian;phylogenetics;false positive
DOI:
doi:10.5061/dryad.65tn4
摘要:
clades. We find that although true coalescence times are more ancient than speciation times under the multispecies coalescent model, estimated coalescence
Data from: Impacts of inference method and dataset filtering on phylogenomic resolution in a rapid radiation of ground squirrels (Xerinae: Marmotini)
负责人:
关键词:
Marmotini;incomplete lineage sorting;Concatenation;gene tree estimation error;coalescent;UCEs;Miocene - Holocene
DOI:
doi:10.5061/dryad.t358vv1
摘要:
and bootstrap support between concatenation- and coalescent-based inferences; among methods within the coalescent framework; and within all methods in res
Data from: Leapfrogging the Mexican highlands: influence of biogeographical and ecological factors on the diversification of highland species
负责人:
关键词:
Sarcohyla calthula;Hylidae;Sarcohyla bistincta;phylogeography;population structure;niche modeling;Sarcohyla pentheter
DOI:
doi:10.5061/dryad.72r4b86
摘要:
. A species tree analysis using the multispecies coalescent model did not support the monophyly of the five S. bistincta populations. We used niche modelling
Data from: Delimiting species-poor datasets using single molecular markers: a study of barcode gaps, haplowebs and GMYC
负责人:
关键词:
species delimitation;haplowebs;Heterozygosity;barcode gap;generalized mixed Yule-coalescent model;taxonomy;systematics;molecular markers
DOI:
doi:10.5061/dryad.t7m5v
摘要:
s rarely been the focus of such attempts. Here we compare the performance of barcode gap detection, haplowebs and generalized mixed Yule–coalescent (GMYC
Data from: Bayesian divergence-time estimation with genome-wide SNP data of sea catfishes (Ariidae) supports Miocene closure of the Panamanian
负责人:
关键词:
Teleosts;Ariidae;molecular clock;fossil record;Dorylinae;SNPs;phylogeny;Miocene;Bayesian inference;Pliocene;RAD sequencing;Pleistocene
DOI:
doi:10.5061/dryad.f8k84
摘要:
using the more appropriate multi-species coalescent model, we here develop a new method combining the SNP-based Bayesian species-tree inference
Data from: Pathways of cryptic invasion in a fish parasite traced using coalescent analysis and epidemiological survey
负责人:
关键词:
Directionality of migration;Ligula intestinalis;Parasite introduction;Coevolution;Aquaculture;Population split
DOI:
doi:10.5061/dryad.54fk2
摘要:
introduced fish species in Tunisia. To test the suggested pathway of introduction, microsatellite data were examined in a model-based coalescent analysis usi
Data from: Worldwide phylogeny of three-spined sticklebacks
负责人:
关键词:
Pleistocene to Holocene.;SNP;Gasterosteus;coalescent;RAD-seq;phylogenomics;Gasterosteus aculeatus
DOI:
doi:10.5061/dryad.2529hr1
摘要:
ts of the species distribution range, we subjected thousands of single nucleotide polymorphisms to coalescent analyses in order to reconstruct a robust worldwide phylogeny
Data from: A preliminary framework for DNA barcoding, incorporating the multispecies coalescent
负责人:
关键词:
species delimitation;Sarcophaga;incomplete lineage sorting;Bayesian;barcode;coalescent
DOI:
doi:10.5061/dryad.st467
摘要:
incorporate coalescent theory into the analysis of species trees and species delimitation (Fujita et al. 2012) and are conveniently accessible as software

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