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Data from: Marginal likelihood estimate comparisons to obtain optimal species delimitations in Silene sect. Cryptoneurae (Caryophyllaceae)
负责人:
关键词:
section Cryptoneurae;Bayes factors;Silene;species delimitation;Multispecies coalescent;Caryophyllaceae;Silene ertekinii sp. nov.
DOI:
doi:10.5061/dryad.nj984
摘要:
Coalescent-based inference of phylogenetic relationships among species takes into account gene tree incongruence due to incomplete lin
Data from: Modeling human population separation history using physically phased genomes
负责人:
关键词:
haplotypes;human genome;Homo Sapiens;human;fosmid;phased
DOI:
doi:10.5061/dryad.r7fs8
摘要:
Coalescent (PSMC) and Multiple Sequentially Markovian Coalescent (MSMC) models. We find that statistically phased haplotypes yield a more recent spli
mits and divergence times of montane rattlesnakes (Viperidae: Crotalus)
负责人:
关键词:
systematics;Crotalus;genomics;Bayesian;Coalescence;speciation;Rattlesnakes
DOI:
doi:10.5061/dryad.4467407
摘要:
ke accurate phylogenetic inferences. Coalescent-based methods of species tree inference have become common, and concatenation has been shown in simulation
Data from: Demographic modelling reveals a history of divergence with gene flow for a glacially tied stonefly in a changing post-Pleistoce
负责人:
关键词:
alpine stream ecology;global change;population genomics;Glacier National Park;Lednia tumana;RAD sequencing;coalescent;phylogeography;conservation genetics;Pleistocene
DOI:
doi:10.5061/dryad.4vg17
摘要:
tic structure for 11 L. tumana populations. Using identified clusters, we assessed demographic history through model selection and parameter estimation in a coalescent
Data from: Computational performance and statistical accuracy of *BEAST and comparisons with other methods
负责人:
关键词:
Concatenation;Bayesian phylogenetics;Gene tree;Primates;Species tree;Pedicularis;Multispecies coalescent;Supermatrix;phylogenomics
DOI:
doi:10.5061/dryad.02tf9
摘要:
Under the multispecies coalescent model of molecular evolution, gene trees have independent evolutionary histories within a shared species
Data from: Coalescent-based species delimitation approach uncovers high cryptic diversity in the cosmopolitan lichen-forming fungal genus
负责人:
关键词:
Protoparmelia;BPP;coalescent-based models;Multilocus phylogeny;species delimitation;cryptic species
DOI:
doi:10.5061/dryad.0q515
摘要:
ng two coalescent-based species delimitation methods – BP&P and spedeSTEM. Our results suggest the presence of a tropical and an extra-tropical lineage, and eleven pr
Data from: Distributional shifts – not geographic isolation – as a probable driver of montane species divergence
负责人:
关键词:
coalescent modeling;Melanoplus oregonensis;Holocene;speciation;phylogeography;Pleistocene
DOI:
doi:10.5061/dryad.6v4ks
摘要:
ed as a diffusion process or was informed by differences in habitat suitabilities across the landscape. With validation analyses to confirm the models provide a good fit
Data from: Historical species distribution models predict species limits in western Plethodon salamanders
负责人:
关键词:
species delimitation;range expansion;Plethodon vandykei;niche model;Plethodon idahoensis;Plethodon larselli;coalescent
DOI:
doi:10.5061/dryad.55137
摘要:
since the end of the Pleistocene. We generate species distribution models (SDM) of the current range, hindcast these models onto a climatic model 21 Ka
Data from: Adaptation with gene flow across the landscape in a dune sunflower
负责人:
关键词:
Helianthus petiolaris;Landscape Genetics;Ecological Genetics;speciation;Adaptation;Population Genetics - Empirical
DOI:
doi:10.5061/dryad.158pb518
摘要:
, using landscape genetics approaches, such as circuit theory and multiple regression of distance matrices, in addition to coalescent modelling
Data from: The identification of the closest living relative(s) of tetrapods: phylogenomic lessons for resolving short ancient internodes
负责人:
关键词:
Species tree;lungfish;Coalescence;phylogenomic;long-branch attraction;model misspecification;likelihood mapping;Gene tree;coelacanth;Systematic error;Compositional heterogeneity;missing data
DOI:
doi:10.5061/dryad.gd74v
摘要:
and applied different correction techniques. A multispecies coalescent approach is used to account for deep coalescence that might come from the short and deep

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