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Data from: Robust design for coalescent model inference
负责人:
关键词:
population genetic inference;structured coalescent;Experimental design;sequential Markovian coalescent;Coalescent Theory;skyline models
DOI:
doi:10.5061/dryad.n7rm21c
摘要:
the skyline demographic coalescent model, spatio-temporal sampling under the structured coalescent model, and time discretization for sequentially Markovian
Data from: A multispecies coalescent model for quantitative traits
负责人:
关键词:
DOI:
doi:10.5061/dryad.m2s1735
摘要:
We present a multispecies coalescent model for quantitative traits that allows for evolutionary inferences at micro- and macroevolutionary scales
Data from: Model-based species delimitation: are coalescent species reproductively isolated?
负责人:
关键词:
Multispecies coalescent;BPP;Drosophila<\/i> speciation;Genetic distance
DOI:
doi:10.5061/dryad.fk869rf
摘要:
statistical models rooted in the multispecies coalescent process. Specifically, these models allow for simultaneous estimation of the number of species present
Data from: Coalescent versus concatenation methods and the placement of Amborella as sister to water lilies
负责人:
关键词:
Nymphaeales;long-branch attraction;Amborella trichopoda;Coalescent methods;concatenation methods;elevated substitution rates
DOI:
doi:10.5061/dryad.qb251
摘要:
nucleotide sites corroborate results from coalescent analyses, while fast-evolving sites place Amborella alone as the first lineage of extant angiosperms
Data from: Considering gene flow when using coalescent methods to delimit lineages of North American pitvipers of the genus Agkistrodon
负责人:
关键词:
gene flow;species delimitation;Bayesian;Pliocene and Pleistocene;Agkistrodon piscivorus;Agkistrodon contortrix;Populations;coalescent
DOI:
doi:10.5061/dryad.v2n38
摘要:
Examining species diversity and mechanisms of speciation using coalescent models provides a framework for how regional diversity is accrued, eve
Data from: Species delimitation with gene flow
负责人:
关键词:
Scincella;Multispecies coalescent;Sarracenia;approximate likelihoods;isolation-with-migration;Homo Sapiens;genealogical divergence index;coalescent simulations
DOI:
doi:10.5061/dryad.t8016
摘要:
to identify evolutionarily independent lineages (i.e., to delimit species) using genetic data have typically adopted multispecies coalescent approaches tha
Data from: Genealogical working distributions for Bayesian model testing with phylogenetic uncertainty
负责人:
关键词:
working distribution;marginal likelihood;MCMC;phylogenetics;Bayes factor;Bayesian inference;coalescent model
DOI:
doi:10.5061/dryad.8tm76
摘要:
Marginal likelihood estimates to compare models using Bayes factors frequently accompany Bayesian phylogenetic inference. Approaches to es
Data from: Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model
负责人:
关键词:
Mammals;cds sequences of 447 genes used in the study
DOI:
doi:10.5061/dryad.3629v
摘要:
and taxa, which produced strongly conflicting topologies. In contrast, the coalescent methods, which accommodate gene tree heterogeneity, yield a phylogeny
Data from: HyDe: a Python package for genome-scale hybridization detection
负责人:
关键词:
gene flow;Coalescence;ABBA-BABA;hybridization;phylogenetic invariants
DOI:
doi:10.5061/dryad.372sq
摘要:
we introduce HyDe, a software package for detecting hybridization using phylogenetic invariants arising under the coalescent model with hybridization. HyDe

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