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Data from: Hybridization could be a common phenomenon within the highly diverse lizard genus Liolaemus
负责人:
关键词:
gene flow;Coalescence;incomplete lineage sorting;model-based approach;hybridization;lizards
DOI:
doi:10.5061/dryad.fm0g3m5
摘要:
. We included molecular data (12 nuclear and 2 mitochondrial genes) from 127 individuals, and results of a coalescent model-based analysis show that the most li
from integrative distributional, demographic and coalescent modelling and ABC model selection
负责人:
关键词:
approximate Bayesian computation;climate change;Quercus chrysolepis;drought;California Floristic Province;iDDC modelling;Genetic structure;Holocene;Pleistocene
DOI:
doi:10.5061/dryad.5gv12
摘要:
st probable models for explaining the patterns of genetic variation thus share a common component, highlighting the potential importance of seasonal
Data from: Effects of phylogenetic reconstruction method on the robustness of species delimitation using single-locus data
负责人:
关键词:
species delimitation;Metabarcoding;Drosophila;DNA Barcoding;PTP;speciation;coalescent;GMYC;OTU;Lepidoptera;molecular dating;Cypraeidae;NGS;rotifera
DOI:
doi:10.5061/dryad.8rv46
摘要:
1. Coalescent-based species delimitation methods combine population genetic and phylogenetic theory to provide an objective means for delin
Data from: Model choice, missing data and taxon sampling impact phylogenomic inference of deep Basidiomycota relationships
负责人:
关键词:
DOI:
doi:10.5061/dryad.g0db883
摘要:
ng of smuts with mushroom-forming fungi, often leading to maximal bootstrap support in both concatenation and coalescent analyses. On the contrary, the mo
Data from: Impact of past climatic changes and resource availability on the population demography of three food-specialist bees
负责人:
关键词:
demographic history food specialization phytophagous insects intraspecific diversity population fragmentation coalescent simulations
DOI:
doi:10.5061/dryad.0g2f5
摘要:
simulated using spatially explicit models of coalescence suggests that M. leporina recovered a range and population size close to their current levels
Data from: Adaptive estimation for epidemic renewal and phylogenetic skyline models
负责人:
关键词:
Phylodynamics;Epidemiology;Skyline plots;Renewal models;Coalescent processes;model selection;Information theory
DOI:
doi:10.5061/dryad.mpg4f4qv6
摘要:
ng renewal, skyline and other models in biology. Rigorous and interpretable model selection is necessary if trustworthy and justifiable conclusions ar
Data from: Rarity and incomplete sampling in DNA-based species delimitation
负责人:
关键词:
effective population size;Coleoptera;Scarabaeidae;singletons;Sericini
DOI:
doi:10.5061/dryad.h6q11
摘要:
g for the GMYC method in particular under variable NeNe. This effect was less pronounced for methods of species delimitation not based on coalescent models.
Data from: Phylogeography of a widespread lizard complex reflects patterns of both geographic and ecological isolation
负责人:
关键词:
habitat isolation;Anolis;silky anoles;ecological niche model;Isolation-by-Environment;current;Anolis sericeus;Holocene;phylogeography
DOI:
doi:10.5061/dryad.p65mc58
摘要:
coalescent simulations to characterize how the major lineages of silky anoles have diverged. Our results revealed that the mode of divergence for major
Data from: Inferring the geographic origin of a range expansion: latitudinal and longitudinal coordinates inferred from genomic data in an ABC
负责人:
关键词:
Last Glacial Maximum;range expansion;ABC;niche modeling;?-statistics;expansion origin;Ochotona collaris
DOI:
doi:10.5061/dryad.4s1gg
摘要:
the geographic origin of range expansion using a spatially explicit coalescent model and an Approximate Bayesian Computation testing framework. In addition to asses
Data from: Differential effect of selection against LINE retrotransposons among vertebrates inferred from whole-genome data and demographic modeling
负责人:
关键词:
purifying selection;comparative population genomics;retrotransposons;Transposable elements;approximate Bayesian computation;composite likelihood optimization
DOI:
doi:10.5061/dryad.qd300cb
摘要:
, coalescent simulations, and probabilistic inference against population-level whole-genome data sets for four model species: one population each of threes

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