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Data from: Ribosomal DNA sequence heterogeneity reflects intra-species phylogenies and predicts genome structure in two contrasting yeast species
- 负责人：
- DOI：
- doi:10.5061/dryad.0674n
- 摘要：
- on, both of which may be significant barriers to accurate phylogenetic inference. We recently analysed datasets from the Saccharomyces Genome Resequenc
locus phylogenetic methods
- 负责人：
- DOI：
- doi:10.5061/dryad.t49d5
- 摘要：
- and phylogenetic inference. An approach that involves elements of both statistical phylogeography (e.g., Isolation with Migration analyses) and multi
Data from: The phylogenetic utility and functional constraint of microRNA flanking sequences
- 负责人：
- DOI：
- doi:10.5061/dryad.49q24
- 摘要：
- phylogenetic inference. Here, using reference taxa with established phylogenetic relationships, we demonstrate that miRNA sequences are of high utility in quantitative, ra
Data from: A synchronized global sweep of the internal genes of modern avian influenza virus
- 负责人：
- DOI：
- doi:10.5061/dryad.m04j9
- 摘要：
- of RNA viruses such as influenza?A virus (IAV) are still incompletely understood. Phylogenetic inference is crucial to reconstructing the origins and tracing
Data from: The evolutionary history of Xiphophorus fish and their sexually selected sword: a genome-wide approach using restriction site-asso
- 负责人：
- 关键词：
- pre-existing bias hypothesis;Xiphophorus;phylogenetics;hybridization;RAD sequencing;sexual selection
- DOI：
- doi:10.5061/dryad.728b4
- 摘要：
- t RAD sequencing data has for resolving previously problematic phylogenetic relationships, particularly among relatively closely related species.
Data from: Exon capture phylogenomics: efficacy across scales of divergence
- 负责人：
- DOI：
- doi:10.5061/dryad.34274
- 摘要：
- . Our main goal was to study the efficacy of enrichment of targeted loci at different levels of phylogenetic divergence from the PD species. In taxa sharing
Data from: Monte Carlo Strategies for selecting parameter values in simulation experiments
- 负责人：
- 关键词：
- phylogenetic analysis;Simulation;Markov chain Monte Carlo;Plant domestication;Importance sampling
- DOI：
- doi:10.5061/dryad.366j4
- 摘要：
- n the extraordinary success of Monte Carlo methods for conducting inference in phylogenetics, and indeed throughout the sciences, we investigate ways in whic
Data from: Efficient detection of repeating sites to accelerate phylogenetic likelihood calculations
- 负责人：
- DOI：
- doi:10.5061/dryad.8f0c8
- 摘要：
- h as phylogenetic inference, species delimitation, model selection and divergence times estimation. Given the alignment, a tree and the evolutionary model parameter
Data from: Concordance analysis in mitogenomic phylogenetics
- 负责人：
- 关键词：
- Hynobiidae;Plethodontidae;Concatenation;mitogenomics;phylogenetics;Bayesian concordance analysis
- DOI：
- doi:10.5061/dryad.8d3r7
- 摘要：
- t have high concordance factors, permitting the inference that these are robustly resolved through phylogenetic signal distributed across the mitoge
Data from: Model selection and parameter inference in phylogenetics using nested sampling
- 负责人：
- DOI：
- doi:10.5061/dryad.220d6t5
- 摘要：
- to established methods. We conclude that NS is a competitive and attractive algorithm for phylogenetic inference. An implementation is available as a package
