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Data from: The more, the better: the use of multiple landmark configurations to solve the phylogenetic relationships in Musteloids
负责人:
关键词:
DOI:
doi:10.5061/dryad.26m66
摘要:
of this sort of data for the inference of phylogenetic relationships remains under debate. Theoretical issues aside, the very existence of historical informati
Data from: Taxon Influence Index: assessing taxon-induced incongruities in phylogenetic inference
负责人:
关键词:
bootstrap support;Taxon Influence;taxon sampling;Tree robustness
DOI:
doi:10.5061/dryad.86137tk6
摘要:
al issue is to quantify the uncertainty of the inference. The posterior probabilities in Bayesian phylogenetic inference and the bootstrap
Data from: Current methods for automated filtering of multiple sequence alignments frequently worsen single-gene phylogenetic inference
负责人:
关键词:
phylogenetic inference;alignment trimming;multiple sequence alignment;alignment filtering;molecular phylogeny;phylogenetics;phylogeny
DOI:
doi:10.5061/dryad.pc5j0
摘要:
Phylogenetic inference is generally performed on the basis of multiple sequence alignments (MSA). Because errors in an alignment can lead to er
Data from: Some limitations of public sequence data for phylogenetic inference (in plants)
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关键词:
Streptophytina;Archaeplastida
DOI:
doi:10.5061/dryad.450qq
摘要:
% of extant plant diversity—to illustrate the potential of public sequence data for broad phylogenetic inference in plants, and we explore the limits
Data from: Effective online Bayesian phylogenetics via sequential Monte Carlo with guided proposals
负责人:
关键词:
phylogenetics;sequential Monte Carlo;Online Inference;Bayesian inference
DOI:
doi:10.5061/dryad.n7n85
摘要:
Modern infectious disease outbreak surveillance produces continuous streams of sequence data which require phylogenetic analysis as data arrives
Data from: Conserved genes, sampling error, and phylogenomic inference
负责人:
关键词:
Sampling error;Incongruence;Yeast;Systematic error;Strong phylogenetic signal;phylogenomics;Slowly-evolving genes
DOI:
doi:10.5061/dryad.157d7
摘要:
of phylogenetic inference from genomic data can be improved by focusing on the subset of genes that have “strong” phylogenetic signals as measured by bootstrap support
Data from: Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cic
负责人:
关键词:
cichlid;adaptive radiation;Cichlidae;RAD-seq;phylogenetics;Next Generation Sequencing
DOI:
doi:10.5061/dryad.6300n
摘要:
on phylogenetic inference using these data are in their infancy. Here, we use NGS data generated from reduced representation genomic libraries of restriction-site-asso
Data from: One tree to link them all: a phylogenetic dataset for the European Tetrapoda
负责人:
关键词:
Mammalia;chronogram;Testudinae;Amphibia;phylogeny;Squamata;Phylogenetic uncertainty;Aves;Tetrapoda
DOI:
doi:10.5061/dryad.11609
摘要:
of supermatrix and supertree approaches. Phylogenetic inference was performed separately for each of the main Tetrapoda groups of Europe except mammals
Data from: Phylogenetic tree estimation with and without alignment: new distance methods and benchmarking
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关键词:
Pair hidden Markov models;phylogenetic inference;Alignment free;Distance-based phylogenetics;statistical alignment
DOI:
doi:10.5061/dryad.n5r49
摘要:
Phylogenetic tree inference is a critical component of many systematic and evolutionary studies. The majority of these studies are based
Data from: Probabilistic graphical model representation in phylogenetics
负责人:
关键词:
tree plate;Inference;Statistical phylogenetics;Graphical Models;modularization;computation
DOI:
doi:10.5061/dryad.nt898
摘要:
software for simulation and statistical inference. Here, we provide an introduction to graphical models for phylogeneticists and extend the standard

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