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Data from: Phylogeny and divergence times of lemurs inferred with recent and ancient fossils in the tree
- 负责人:
- DOI:
- doi:10.5061/dryad.51f00
- 摘要:
- of Madagascar. We combined the morphological data with published DNA sequences to infer near-complete (88% of lemurs) time-calibrated phylogenies. The results sug
Data from: Assessing combinability of phylogenomic data using Bayes Factors
- 负责人:
- DOI:
- doi:10.5061/dryad.gt81779
- 摘要:
- phylogenetic resolution, it also presents us with new challenges when the phylogenetic signal is confused by differences in the evolutionary histories of sampled
Data from: Novel approaches for phylogenetic inference from morphological data and total-evidence dating in squamate reptiles (lizards, snakes
- 负责人:
- DOI:
- doi:10.5061/dryad.dp3js
- 摘要:
- Here, I combine previously underutilized models and priors to perform more biologically-realistic phylogenetic inference from morphologic
Data from: A RAD-sequencing approach to genome-wide marker discovery, genotyping, and phylogenetic inference in a diverse radiation of primates
- 负责人:
- DOI:
- doi:10.5061/dryad.85jn3
- 摘要:
- to the inference of phylogenetic history across an old, diverse radiation of mammals and highlights the broad promise and utility of ddRAD-seq data for molecular
Data from: Constructing phylogenies in the presence of Intra-Individual Site Polymorphisms (2ISPs) with a focus on the nuclear ribosomal cistron
- 负责人:
- DOI:
- doi:10.5061/dryad.21jj2
- 摘要:
- in three common criteria used for phylogenetic inference: Minimum Evolution (via Neighbour Joining), Maximum Parsimony and Maximum Likelihood
Data from: When are phylogenetic analyses misled by convergence? A case study in Texas cave salamanders
- 负责人:
- 关键词:
- salamanders;morphology;convergence;Adaptation;phylogeny;Eurycea;molecular systematics;Homoplasy
- DOI:
- doi:10.5061/dryad.845
- 摘要:
- and misleading phylogenetic estimates that result from adaptive convergence in morphology. In this article, we propose criteria that can be used to infer whether
Data from: Phylogenetic inference and divergence dating of snakes using molecules, morphology and fossils: new insights into convergent evoluti
- 负责人:
- DOI:
- doi:10.5061/dryad.cm603
- 摘要:
- Bayesian divergence time analyses were used to simultaneously infer the phylogenetic relationships and date the major clades of snakes including sever
Data from: Accurate inference of tree topologies from multiple sequence alignments using deep learning
- 负责人:
- DOI:
- doi:10.5061/dryad.ct2895s
- 摘要:
- s remain, these findings suggest that deep learning approaches such as ours have the potential to produce more accurate phylogenetic inferences.
Data from: Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis
- 负责人:
- DOI:
- doi:10.5061/dryad.7h46hg2
- 摘要:
- works, and infer the direction of transmission within them at an estimated error rate of 16.3% [8.8–28.3%]. With this error rate, deep-sequence phylogenetics cann
Data from: Phylogeny of Selaginellaceae: there is value in morphology after all!
- 负责人:
- DOI:
- doi:10.5061/dryad.88fh0
- 摘要:
- standing of the evolutionary history of the single genus Selaginella. Here we present a large-scale phylogenetic analysis of Selaginella, and based on the resulting phylogeny, we dis