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Data from: Phylogeny and divergence times of lemurs inferred with recent and ancient fossils in the tree
负责人:
关键词:
Total Evidence;Lorisiformes;Bayesian phylogenetics;chronogram;primatology;Cenozoic;calibration;Lemuriformes
DOI:
doi:10.5061/dryad.51f00
摘要:
of Madagascar. We combined the morphological data with published DNA sequences to infer near-complete (88% of lemurs) time-calibrated phylogenies. The results sug
Data from: Assessing combinability of phylogenomic data using Bayes Factors
负责人:
关键词:
Concatenation;marginal likelihood;Bayes factor;Bayes Factor calibration;phylogenetic dissonance;phylogenomics
DOI:
doi:10.5061/dryad.gt81779
摘要:
phylogenetic resolution, it also presents us with new challenges when the phylogenetic signal is confused by differences in the evolutionary histories of sampled
Data from: A RAD-sequencing approach to genome-wide marker discovery, genotyping, and phylogenetic inference in a diverse radiation of primates
负责人:
关键词:
double-digest RAD sequencing;reduced representation sequencing;non-model taxa;phylogenetics;New World primates;SNP markers;20-25 mya;Platyrrhini;restriction enzyme digests
DOI:
doi:10.5061/dryad.85jn3
摘要:
to the inference of phylogenetic history across an old, diverse radiation of mammals and highlights the broad promise and utility of ddRAD-seq data for molecular
Data from: Constructing phylogenies in the presence of Intra-Individual Site Polymorphisms (2ISPs) with a focus on the nuclear ribosomal cistron
负责人:
关键词:
Nuclear DNA;phylogeny reconstruction;intra-individual site polymorphism;phylogenetic networks
DOI:
doi:10.5061/dryad.21jj2
摘要:
in three common criteria used for phylogenetic inference: Minimum Evolution (via Neighbour Joining), Maximum Parsimony and Maximum Likelihood
Data from: When are phylogenetic analyses misled by convergence? A case study in Texas cave salamanders
负责人:
关键词:
salamanders;morphology;convergence;Adaptation;phylogeny;Eurycea;molecular systematics;Homoplasy
DOI:
doi:10.5061/dryad.845
摘要:
and misleading phylogenetic estimates that result from adaptive convergence in morphology. In this article, we propose criteria that can be used to infer whether
Data from: Phylogenetic inference and divergence dating of snakes using molecules, morphology and fossils: new insights into convergent evoluti
负责人:
关键词:
Total Evidence;limb loss;Bayesian phylogenetics;relaxed clock;Macrostomata;Serpentes;ancestral state reconstruction;Ophidia
DOI:
doi:10.5061/dryad.cm603
摘要:
Bayesian divergence time analyses were used to simultaneously infer the phylogenetic relationships and date the major clades of snakes including sever
Data from: Accurate inference of tree topologies from multiple sequence alignments using deep learning
负责人:
关键词:
Supervised Machine Learning;convolutional neuronal network;phylogenetics
DOI:
doi:10.5061/dryad.ct2895s
摘要:
s remain, these findings suggest that deep learning approaches such as ours have the potential to produce more accurate phylogenetic inferences.
Data from: Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis
负责人:
关键词:
Transmission networks;HIV;Infectious disease epidemiology;2011-2015;phylogenetics;Deep-sequence phylogenetics;HIV prevention;Phylodynamics
DOI:
doi:10.5061/dryad.7h46hg2
摘要:
works, and infer the direction of transmission within them at an estimated error rate of 16.3% [8.8–28.3%]. With this error rate, deep-sequence phylogenetics cann
Data from: Phylogeny of Selaginellaceae: there is value in morphology after all!
负责人:
关键词:
morphology;pgiC;lycophytes;phylogeny;Selaginellaceae;rbcL;Selaginella;SQD1
DOI:
doi:10.5061/dryad.88fh0
摘要:
standing of the evolutionary history of the single genus Selaginella. Here we present a large-scale phylogenetic analysis of Selaginella, and based on the resulting phylogeny, we dis

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