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Data from: Ultraconserved elements anchor thousands of genetic markers for target enrichment spanning multiple evolutionary timescales
- 负责人：
- DOI：
- doi:10.5061/dryad.64dv0tg1
- 摘要：
- alignments of 854 of these loci to unambiguously recover the established evolutionary relationships within and among three ancient bird lineages. Because ma
Data from: GHOST: Recovering Historical Signal from Heterotachously-evolved Sequence Alignments
- 负责人：
- DOI：
- doi:10.5061/dryad.t389h81
- 摘要：
- data by sampling phylogenomic alignments of varying lengths from a plastome alignment. We then carry out inference under the GHOST model on a phylogenomic
Data from: Using supermatrices for phylogenetic inquiry: an example using the sedges
- 负责人：
- DOI：
- doi:10.5061/dryad.6p76c3pb
- 摘要：
- le on GenBank. We explore the properties of these trees and their utility for phylogenetic inference, and show that even the highly incomplete alignments
Data from: PrimerMiner: an R package for development and in silico validation of DNA metabarcoding primers
- 负责人：
- DOI：
- doi:10.5061/dryad.4c3g9
- 摘要：
- ng complete mitochondrial genomes alone. Furthermore, we visualized the generated OTU sequence alignments and describe how to evaluate primers in silico using PrimerMiner
Data from: Biogeography and evolution of body size and life history of African frogs: phylogeny of squeakers (Arthroleptis) and long-?ngered frogs
- 负责人：
- DOI：
- doi:10.5061/dryad.1310
- 摘要：
- analyzing alignments generated with different gap costs and a consensus alignment. The consensus alignment results in species paraphyly, low nodal support
Data from: Concatenated alignments and the case of the disappearing tree
- 负责人：
- DOI：
- doi:10.5061/dryad.06640
- 摘要：
- ween individual and concatenated alignments.ResultsWe analyzed prokaryotic datasets comprising 248 invidual gene trees from 315 genomes at three taxonomic depths
Data from: Evolutionary history of chimpanzees inferred from complete mitochondrial genomes
- 负责人：
- DOI：
- doi:10.5061/dryad.1862
- 摘要：
- ge, computationally difficult sequence alignments may be obtained by implementing our novel method of bootstrapping smaller, randomly sub-sampled alignments.
Data from: ModelOMatic: fast and automated comparison between RY, nucleotide, amino acid, and codon substitution models
- 负责人：
- DOI：
- doi:10.5061/dryad.gq0pb
- 摘要：
- data set. For the PANDIT and arthropod data, we find that amino acid models are selected for the overwhelming majority of alignments; with progressively smaller numb
Data from: Phylogenomic analyses resolve an ancient trichotomy at the base of Ischyropsalidoidea (Arachnida, Opiliones) despite high levels of gene
- 负责人：
- DOI：
- doi:10.5061/dryad.3mr26
- 摘要：
- of ancient divergences in the harvestmen superfamily Ischyropsalidoidea (Arachnida, Opiliones, Dyspnoi). We rely on Sanger sequences to resolve nodes
Data from: DNA barcoding meets molecular scatology: short mtDNA sequences for standardized species assignment of carnivore noninvasive samples
- 负责人：
- DOI：
- doi:10.5061/dryad.75748
- 摘要：
- h of these segments. Alignments were complemented with archival sequences, and analyzed with three approaches (tree-based, distance-based and character-based
