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Data from: SATé-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees
- 负责人：
- DOI：
- doi:10.5061/dryad.n9r3h
- 摘要：
- Highly accurate estimation of phylogenetic trees for large datasets is difficult, in part because multiple sequence alignments must be accurate
Data from: Current methods for automated filtering of multiple sequence alignments frequently worsen single-gene phylogenetic inference
- 负责人：
- DOI：
- doi:10.5061/dryad.pc5j0
- 摘要：
- Phylogenetic inference is generally performed on the basis of multiple sequence alignments (MSA). Because errors in an alignment can lead to errors
Data from: Simple chained guide trees give poorer multiple sequence alignments than inferred trees in simulation and phylogenetic benchmarks
- 负责人：
- DOI：
- doi:10.5061/dryad.4r5b8
- 摘要：
- . In PNAS, Boyce et al. report that alignments reconstructed using simple chained trees (i.e., comb-like topologies) with random leaf assignment performed bet
Data from: A simulation-based approach to statistical alignment
- 负责人：
- DOI：
- doi:10.5061/dryad.p069231
- 摘要：
- h insertion-deletion (indel) and substitution events. In contrast, alignments based on stochastic models aim to explicitly describe the evolutionary dynamics
Data from: AMAS: a fast tool for large alignment manipulation and computing of summary statistics
- 负责人：
- DOI：
- doi:10.5061/dryad.p2q52
- 摘要：
- alignments are needed. Here I present AMAS (Alignment Manipulation And Summary), a tool that can be used either as a stand-alone command-line utili
Data from: Fully automated sequence alignment methods are comparable to, and much faster than, traditional methods in large data sets: an examp
- 负责人：
- 关键词：
- DOI：
- doi:10.5061/dryad.nc220
- 摘要：
- of full genomes and genomic fragments), which can compound the computational issues related to MSA. Traditionally, alignments are produced with automated al
Data from: Two influential primate classifications logically aligned
- 负责人：
- DOI：
- doi:10.5061/dryad.6jg71
- 摘要：
- h humans and machines can process, that is, to logically represent taxonomic alignments across multiple classifications. We demonstrate that such alignments
lising evolutionarily conserved DNA sequences"" data-category="" data-cropid="" data-dimen="" data-id="259A5B2C-B6B6-492D-834C-D41955585C5A"> Supporting data for "G-Anchor: a novel approach for whole-genome comparative mapping utilising evolutionarily conserved DNA sequences"
- 负责人：
- 关键词：
- Genome-Mapping Metabolomic Software Workflow whole-genome alignment sequence mapping sequencing anchoring highly conserved elements (hce) genome evolution
- DOI：
- doi:10.5524/100415
- 摘要：
- expensive high performance computing systems due to the need to explore extensive local alignments. With hundreds of sequenced animal genomes available n
Data from: Social behavior in bees influences the abundance of Sodalis (Enterobacteriaceae) symbionts
- 负责人：
- DOI：
- doi:10.5061/dryad.0vt7nt0
- 摘要：
- fer in abundance between eusocial and solitary bees. Phylogenetic reconstructions based on whole-genome alignments indicate that Sodalis ha
Data from: Delimiting species in the genus Otospermophilus (Rodentia: Sciuridae) using genetics, ecology, and morphology
- 负责人：
- DOI：
- doi:10.5061/dryad.s4h2j
- 摘要：
- microsatellite markers, and 11 nuclear loci), environmental data (eight bioclimatic variables), and morphological data (23 skull measurements). We used the maximum numb
