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Data from: Exploring data interaction and nucleotide alignment in a multiple gene analysis of Ips (Coleoptera: Scolytinae)
- 负责人：
- DOI：
- doi:10.5061/dryad.678
- 摘要：
- et al., 1999). Apparent incongruence between data partitions is in part due to suboptimal alignments and bias of character transformations, but ther
Data from: Recombination-dependent replication and gene conversion homogenize repeat sequences and diversify plastid genome structure
- 负责人：
- DOI：
- doi:10.5061/dryad.p34h3
- 摘要：
- ) sequences to characterize repeat structure in the plastome of Monsonia emarginata L'Hér. (Geraniaceae). We used OrgConv and inspected nucleotide alignments
Data from: A likelihood-based comparison of population histories in a parasitoid guild
- 负责人：
- DOI：
- doi:10.5061/dryad.0g0fs
- 摘要：
- the power of this framework on simulated data, and - using triplet alignments of intronic loci - quantify the support for all possible divergence
Data from: A universal probe set for targeted sequencing of 353 nuclear genes from any flowering plant designed using k-medoids clustering
- 负责人：
- 关键词：
- Nuclear Genes;k-means clustering;Target Enrichment;HybSeq;Machine Learning;Angiosperms;phylogenomics
- DOI：
- doi:10.5061/dryad.s3h9r6j
- 摘要：
- ly in the angiosperms (flowering plants). We used multiple sequence alignments from over 600 angiosperms for 353 putatively single-copy protein-coding genes ident
Data from: SimPhy: phylogenomic simulation of gene, locus and species trees
- 负责人：
- DOI：
- doi:10.5061/dryad.707td
- 摘要：
- sequence alignments under a plethora of substitution models using the program INDELible. We validate SimPhy's output using theoretical expectations and other programs
Data from: A new subfamily LIP of the major intrinsic proteins
- 负责人：
- DOI：
- doi:10.5061/dryad.8f61v
- 摘要：
- s of MIPs from other organisms. Multiple sequence alignments revealed motifs that were homologous to functionally important NPA motifs and the so-called ar
Data from: In silico site-directed mutagenesis informs species-specific predictions of chemical susceptibility derived from the Sequence Alignment
- 负责人：
- DOI：
- doi:10.5061/dryad.2tg6967
- 摘要：
- s made manual interpretation of alignments time consuming and potentially inconsistent. Therefore, this study used in silico site-directed mutagenesis
Data from: The unexpected depths of genome-skimming data: a case study examining Goodeniaceae floral symmetry genes
- 负责人：
- DOI：
- doi:10.5061/dryad.0500c
- 摘要：
- , CYC2, CYC3A, and CYC3B) from a majority of the species. Alignments of the fragments included the entire coding sequence as well as upstream
Data from: Genetic distance for a general non-stationary Markov substitution process
- 负责人：
- DOI：
- doi:10.5061/dryad.g7g0n
- 摘要：
- to be associated with longer edge lengths. The marked improvement in consistency between the general non-stationary Markov model and sequence alignments leads
Data from: Neurospora and the dead-end hypothesis: genomic consequences of selfing in the model genus.
- 负责人：
- DOI：
- doi:10.5061/dryad.4n9b4
- 摘要：
- It is becoming increasingly evident that adoption of different reproductive strategies, such as sexual selfing and asexuality, greatly impacts
