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Data from: APPLES: Scalable distance-based phylogenetic placement with or without alignments
- 负责人：
- DOI：
- doi:10.5061/dryad.78nf7dq
- 摘要：
- Placing a new species on an existing phylogeny has increasing relevance to several applications. Placement can be used to update phylogenies
Data from: Species delimitation and phylogeny in the genus Nasutitermes (Termitidae: Nasutitermitinae) in French Guiana
- 负责人：
- DOI：
- doi:10.5061/dryad.gh317
- 摘要：
- anthropization. Multigenic phylogenies based on combined alignments (1426–1784 bp) were also reconstructed to identify ancestral ecological niches and major-pest
Data from: Accurate inference of tree topologies from multiple sequence alignments using deep learning
- 负责人：
- DOI：
- doi:10.5061/dryad.ct2895s
- 摘要：
- network (CNN) to infer quartet topologies from multiple sequence alignments. This CNN can readily be trained to make inferences using both gapped and ungapped
Data from: Universal target-enrichment baits for anthozoan (Cnidaria) phylogenomics: new approaches to long-standing problems
- 负责人：
- DOI：
- doi:10.5061/dryad.36n40
- 摘要：
- recovered from octocorals (783 ± 138 loci) than hexacorals (475 ±187 loci). Phylogenetically informative sites ranged from 26-49% for alignments at differing
Data from: The Rickettsia endosymbiont of Ixodes pacificus contains all the genes of de novo folate biosynthesis
- 负责人：
- DOI：
- doi:10.5061/dryad.2jc88
- 摘要：
- and molecular approaches were carried out. MUMmer genome alignments of whole genome sequence of I. scapularis, a close relative to I. pacificus, against completely
Data from: SuperFine: fast and accurate supertree estimation
- 负责人：
- DOI：
- doi:10.5061/dryad.879st
- 摘要：
- is to use phylogenetic estimation methods (such as maximum likelihood) on a supermatrix produced by concatenating multiple sequence alignments
and alignments
- 负责人：
- DOI：
- doi:10.5061/dryad.53mv1
- 摘要：
- alignments of original and revisionary classifications are also provided, in addition to conventional nomenclatural provenance information. A phylogenetic
Data from: Stalking the fourth domain in metagenomic data: searching for, discovering, and interpreting novel, deep branches in phylogenetic trees
- 负责人：
- DOI：
- doi:10.5061/dryad.8384
- 摘要：
- le could not accurately identify very deeply branched ss-rRNAs (largely due to difficulties in making robust sequence alignments for novel rRNA fragments
Data from: The root of flowering plants and total evidence
- 负责人：
- DOI：
- doi:10.5061/dryad.vg97f
- 摘要：
- multiple-sequence alignments that have a poor fit to time-reversible substitution models. These sites exhibit significant levels of homoplasy, compositional
Data from: Challenges and solutions for analyzing dual RNA-seq data for non-model host/pathogen systems
- 负责人：
- DOI：
- doi:10.5061/dryad.t40nj78
- 摘要：
- of alignments of dual RNA-seq when using the genomic resources of a closely-related species to the species of interest by simulating datasets of mixed transcripts
