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Data from: Concatenated alignments and the case of the disappearing tree
- 负责人：
- DOI：
- doi:10.5061/dryad.06640
- 摘要：
- c diversity, there are open questions as to whether concatenation amplifies or averages phylogenetic signals residing in individual genes. Here we investigate
Data from: The multispecies coalescent model outperforms concatenation across diverse phylogenomic
- 负责人：
- DOI：
- doi:10.5061/dryad.7q6q3s0
- 摘要：
- A statistical framework of model comparison and model validation is essential to resolving the debates over concatenation and coalescent models
Data from: Evaluating summary methods for multi-locus species tree estimation in the presence of incomplete lineage sorting
- 负责人：
- DOI：
- doi:10.5061/dryad.310q3
- 摘要：
- e between gene trees and the species tree. Furthermore, while concatenation, a traditional approach to tree estimation, has excellent performance under ma
Data from: Concatenation and concordance in the reconstruction of mouse lemur phylogeny: an empirical demonstration of the effect of allele sampling
- 负责人：
- DOI：
- doi:10.5061/dryad.3mt58823
- 摘要：
- e analyzed with standard concatenation techniques. In our study, we conduct a phylogenetic study for a nearly complete species sample of the dwarf and mouse
Data from: Resolving ambiguity of concatenation in multi-locus sequence data for the construction of phylogenetic supermatrices
- 负责人：
- DOI：
- doi:10.5061/dryad.qp367
- 摘要：
- trees that hamper sequence concatenation based on Linnaean binomials. We applied methods from graph theory to minimize ambiguity of concatenation globally ove
Data from: Computational performance and statistical accuracy of *BEAST and comparisons with other methods
- 负责人：
- DOI：
- doi:10.5061/dryad.02tf9
- 摘要：
- . In comparison, supermatrix concatenation methods assume that gene trees share a single common genealogical history, thereby equating gene coalescenc
Data from: Coalescent versus concatenation methods and the placement of Amborella as sister to water lilies
- 负责人：
- DOI：
- doi:10.5061/dryad.qb251
- 摘要：
- ons. Our results also show that commonly applied concatenation methods produce strongly supported, but incongruent placements of Amborella: slow-evolving
Data from: Cryptic diversity in the Mexican highlands: thousands of UCE loci help illuminate phylogenetic relationships, species limits
- 负责人：
- DOI：
- doi:10.5061/dryad.4467407
- 摘要：
- ke accurate phylogenetic inferences. Coalescent-based methods of species tree inference have become common, and concatenation has been shown in simulati
Data from: Incomplete lineage sorting impacts the inference of macroevolutionary regimes from molecular phylogenies when concatenation is employed
- 负责人：
- 关键词：
- Cetacea
- DOI：
- doi:10.5061/dryad.np7332q
- 摘要：
- e. We evaluated the impact of employing concatenation and coalescent-based phylogeny inference in recovering the correct macroevolutionary regime usi
Data from: AMAS: a fast tool for large alignment manipulation and computing of summary statistics
- 负责人：
- DOI：
- doi:10.5061/dryad.p2q52
- 摘要：
- s basic statistics. The manipulation functions include conversions among popular formats, concatenation, extracting sites and splitting according to a pre-defined
