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Data from: Phylogenomic interrogation of Arachnida reveals systemic conflicts in phylogenetic signal
负责人:
关键词:
Arachnids;Concatenation;topological conflict;Palaeozoic;Arachnopulmonata;Arthropoda;Transcriptomics;ancient rapid radiation;orthology prediction
DOI:
doi:10.5061/dryad.nb2f7
摘要:
nonmonophyly of Arachnida with increasing support upon incrementing the number of concatenated genes. Mutually exclusive hypotheses are supported by locus groups
Data from: Complete genome sequences provide a case study for the evaluation of gene-tree thinking
负责人:
关键词:
Shewanellaceae;Shewanella
DOI:
doi:10.5061/dryad.7c7q0
摘要:
within collinear regions were congruent with one another, and none of these 164 topologies matches the result from concatenation. This result is particular
Data from: Mitochondrial phylogenomics of early land plants: mitigating the effects of saturation, compositional heterogeneity, and codon-usage bias
负责人:
关键词:
composition heterogeneity;Early land plants;synonymous codon-usage bias;evolutionary saturation;mitochondrial genome;phylogenomics
DOI:
doi:10.5061/dryad.7b470
摘要:
Phylogenetic analyses using concatenation of genomic-scale data have been seen as the panacea to resolving the incongruences among inferences from fe
Data from: Impacts of inference method and dataset filtering on phylogenomic resolution in a rapid radiation of ground squirrels (Xerinae: Marmotini)
负责人:
关键词:
Marmotini;incomplete lineage sorting;Concatenation;gene tree estimation error;coalescent;UCEs;Miocene - Holocene
DOI:
doi:10.5061/dryad.t358vv1
摘要:
and bootstrap support between concatenation- and coalescent-based inferences; among methods within the coalescent framework; and within all methods in response
Data from: Phylogenomics using target-restricted assembly resolves intra-generic relationships of parasitic lice (Phthiraptera: Columbicola)
负责人:
关键词:
Species tree;Concatenation;aTRAM;coalescent;Coevolution
DOI:
doi:10.5061/dryad.4812p
摘要:
whole-genome sequence data generated from very small, ethanol-preserved specimens, representing up to 61 species of wing lice. Both concatenation
Data from: Resolving phylogenetic relationships of the recently radiated carnivorous plant genus Sarracenia using target enrichment
负责人:
关键词:
species tree estimation;Sarracenia;Recent Radiation;gene capture;Coalescence;phylogenomics
DOI:
doi:10.5061/dryad.nn153
摘要:
the targeted nuclear loci in concatenation and coalescent frameworks elucidated many relationships within Sarracenia even with high heterogeneity among gene
Data from: Effectiveness of phylogenomic data and coalescent species-tree methods for resolving difficult nodes in the phylogeny of advanced snakes
负责人:
关键词:
systematics;Serpentes
DOI:
doi:10.5061/dryad.rb5nc
摘要:
phylogenomic dataset, and compared them to previous concatenation strategies. Here, we generate such a dataset for Caenophidian snakes, a group with >2500

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