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Data from: Phylogenomics of horned lizards (genus: Phrynosoma) using targeted sequence capture data
负责人:
关键词:
Species tree;Concatenation;ultraconserved elements;phylogeny;SVD quartets;Phrynosomatidae;systematics;coalescent;Phrynosoma
DOI:
doi:10.5061/dryad.82p92
摘要:
esidual traces of hybridization. Concatenation and coalescent-based species tree phylogenetic analyses of these new TSC data support the same topology
Data from: Phylogenetic relationships and character evolution in Heuchera (Saxifragaceae) on the basis of multiple nuclear loci
负责人:
关键词:
Heuchera;Saxifragales;Saxifragaceae
DOI:
doi:10.5061/dryad.298d0
摘要:
morphological characters using concatenation and coalescent analysis. Ancestral state reconstruction, diversification, and correlated evolution of morphological traits wer
Data from: Unraveling historical introgression and resolving phylogenetic discord within Catostomus (Osteichthys: Catostomidae)
负责人:
关键词:
Catostomus;Patterson\u2019s D-statistic;ddRAD;Phylogenetic Incongruence;hybridization;introgression;Catostomus spp.
DOI:
doi:10.5061/dryad.8f1j5nd
摘要:
ve hybrid origin of two species. We also applied na?ve binning to explore potential effects of concatenation. Results: We employed 14,007 loci generated from ddRAD sequenc
Data from: Species tree estimation of diploid Helianthus (Asteraceae) using target enrichment
负责人:
关键词:
phylogeny;gene capture;phylogenomics;Sunflower;coalescent
DOI:
doi:10.5061/dryad.4n28n
摘要:
genes used for both coalescent and concatenation analyses. The resulting phylogeny was additionally used to examine the evolution of life history
Data from: Phylogenomics, biogeography and diversification of obligate mealybug-tending ants in the genus Acropyga
负责人:
关键词:
Formicidae;ultraconserved elements;UCEs;herding;Acropyga;Insect systematics;mutualism
DOI:
doi:10.5061/dryad.f4857
摘要:
d a data set of 944 loci of ultraconserved elements (UCEs) to reconstruct the phylogeny of 41 representatives of 23 Acropyga species using both concatenation
Data from: Estimating Bayesian phylogenetic information content
负责人:
关键词:
saturation;conditional clade distribution;Entropy;Concatenation;Bayesian;phylogenetics;information
DOI:
doi:10.5061/dryad.1dn50
摘要:
on of saturation, and detecting conflict among data partitions that can negatively affect analyses of concatenated data.
Data from: Phylogenomics of a rapid radiation: the Australian rainbow skinks
负责人:
关键词:
DOI:
doi:10.5061/dryad.v1d32
摘要:
on of how to sample individuals within species for analyses using the MSC. Results: Phylogenies obtained using concatenation and summary coalescent species tree
Data from: Detecting the anomaly zone in species trees and evidence for a misleading signal in higher-level skink phylogeny (Squamata: Scincidae)
负责人:
关键词:
sequence capture;incomplete lineage sorting;ultraconserved elements;UCE;IDBA;phylogenetics;probes;anomalous gene trees
DOI:
doi:10.5061/dryad.sf6s9
摘要:
ilar to the problem of long-branch attraction, including more data via loci concatenation will only reinforce the support for the incorrect species tree. Empirical
Data from: Construction of a virtual Mycobacterium tuberculosis consensus genome and its application to data from a next generation sequencer
负责人:
关键词:
phylogenetic analysis;Mycobacterium tuberculosis;consensus sequence;virtual typing;SNP concatemer
DOI:
doi:10.5061/dryad.nq070
摘要:
on and concatenation with CS was advantageous because the frequency of crucial SNPs distinguishing among strain lineages was higher than those of H37Rv. The numb
Data from: Conflicting evolutionary histories of the mitochondrial and nuclear genomes in New World Myotis bats
负责人:
关键词:
incomplete lineage sorting;Concatenation;summary tree methods;UCE;ultraconserved elements;Reticulation;Vespertilionidae;phylogenomics
DOI:
doi:10.5061/dryad.5g205
摘要:
ing of 3,648 ultraconserved elements (UCEs). We inferred the phylogeny and explored the effects of concatenation and summary phylogeneti

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