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Data from: The effects of inference method, population sampling and gene sampling on species tree inferences: an empirical study in slender
- 负责人：
- DOI：
- doi:10.5061/dryad.2sc4n
- 摘要：
- differ in whether gene and species trees are estimated simultaneously or sequentially, and in how gene trees are used to infer the species tree
Data from: Gene-tree reconciliation with MUL-trees to resolve polyploidy events
- 负责人：
- DOI：
- doi:10.5061/dryad.pp837
- 摘要：
- and losses in a set of gene trees. We validate our method using gene trees simulated with and without polyploidy, and revisit the history of polyploidy in data
Data from: Ancient hybridizations among the ancestral genomes of bread wheat
- 负责人：
- DOI：
- doi:10.5061/dryad.f6c34
- 摘要：
- r phylogenetic history has been lacking. We used genome assemblies of bread wheat and five diploid relatives to analyze genome-wide samples of gene trees
Data from: Robustness to divergence time underestimation when inferring species trees from estimated gene trees
- 负责人：
- DOI：
- doi:10.5061/dryad.65tn4
- 摘要：
- To infer species trees from gene trees estimated from phylogenomic data sets, tractable methods are needed that can handle dozens to hundreds of loci
Data from: A Bayesian supertree model for genome-wide species tree reconstruction
- 负责人：
- DOI：
- doi:10.5061/dryad.74922
- 摘要：
- Current phylogenomic data sets highlight the need for species tree methods able to deal with several sources of gene tree/species tree incongruence
Data from: Concatenated alignments and the case of the disappearing tree
- 负责人：
- DOI：
- doi:10.5061/dryad.06640
- 摘要：
- BackgroundAnalyzed individually, gene trees for a given taxon set tend to harbour incongruent or conflicting signals. One popular approach
Data from: TreeFix: statistically informed gene tree error correction using species trees
- 负责人：
- DOI：
- doi:10.5061/dryad.44cb5
- 摘要：
- sequence data and species tree information, and we describe an implementation of this framework in TreeFix, a new phylogenetic program for improving gene tree
Data from: Patterns of genetic diversity and differentiation in resistance gene clusters of two hybridizing European Populus species
- 负责人：
- DOI：
- doi:10.5061/dryad.2593t
- 摘要：
- Resistance genes (R-genes) are essential for long-lived organisms such as forest trees, which are exposed to diverse herbivores and pathoge
Data from: Anchored phylogenomics improves the resolution of evolutionary relationships in the rapid radiation of Protea L.
- 负责人：
- DOI：
- doi:10.5061/dryad.vj32s
- 摘要：
- nuclear loci using anchored phylogenomics. We compare several approaches for building species trees, and explore gene tree–species tree discrepancies
Data from: Gene flow among wild and domesticated almond species: insights from chloroplast and nuclear markers
- 负责人：
- Delplancke, Malou
- DOI：
- doi:10.5061/dryad.5f41fq18
- 摘要：
- sion from the wild compartment have been performed in fruit tree species within the genus Prunus but few studies investigated spontaneous gene flow among wild
