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Data from: Efficient exploration of the space of reconciled gene trees
- 负责人：
- DOI：
- doi:10.5061/dryad.pv6df
- 摘要：
- Gene trees record the combination of gene-level events, such as duplication, transfer and loss, and species-level events, such as speciation
Data from: Evaluating summary methods for multi-locus species tree estimation in the presence of incomplete lineage sorting
- 负责人：
- DOI：
- doi:10.5061/dryad.310q3
- 摘要：
- between gene trees and the species tree. Furthermore, while concatenation, a traditional approach to tree estimation, has excellent performance under ma
Data from: Genome-scale phylogenetic analysis finds extensive gene transfer among fungi
- 负责人：
- 关键词：
- birth\u2013death models;gene transfer;gene tree-species tree;gene duplication;genomics;statistics
- DOI：
- doi:10.5061/dryad.r2t49
- 摘要：
- to explain the observed numbers of genes present in a genome; second, ALE, a more recent gene tree-aware method that reconciles gene trees with a species tree
Data from: Does gene tree discordance explain the mismatch between macroevolutionary models and empirical patterns of tree shape and branching times?
- 负责人：
- DOI：
- doi:10.5061/dryad.8f97r
- 摘要：
- entative of random phylogenies. A third possibility arises because phylogenetic reconstruction methods often infer gene trees rather than species trees, producing
Data from: Displayed trees do not determine distinguishability under the network multispecies coalescent
- 负责人：
- DOI：
- doi:10.5061/dryad.t2d38
- 摘要：
- Recent work in estimating species relationships from gene trees has included inferring networks assuming that past hybridization has occurred bet
Data from: The effect of gene flow on coalescent-based species-tree inference
- 负责人：
- DOI：
- doi:10.5061/dryad.j11fh
- 摘要：
- (i.e., gene trees that are discordant with the species tree but that have higher probability than the gene tree concor- dant with the species tree) exist
Data from: Detecting hybridization by likelihood calculation of gene tree extra lineages given explicit models
- 负责人：
- Olave, Melisa
- DOI：
- doi:10.5061/dryad.q084s
- 摘要：
- Explanations for gene tree discordance with respect to a species tree are commonly attributed to deep coalescence (als
Data from: Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees
- 负责人：
- DOI：
- doi:10.5061/dryad.7881
- 摘要：
- Phylogenetic analyses using genome-scale data sets must confront incongruence among gene trees, which in plants is exacerbated by frequent
Data from: Evaluating evolutionary history in the face of high gene tree discordance in Australian Gehyra (Reptilia: Gekkonidae)
- 负责人：
- 关键词：
- Gehyra
- DOI：
- doi:10.5061/dryad.7t354
- 摘要：
- discordance and comparisons of Robinson–Foulds distances showed that discordance between gene trees was significantly higher than that generated by topological
Data from: Coalescent-based species tree inference from gene tree topologies under incomplete lineage sorting by maximum likelihood
- 负责人：
- DOI：
- doi:10.5061/dryad.240h7g8r
- 摘要：
- Incomplete lineage sorting can cause incongruence between the phylogenetic history of genes (the gene tree) and that of the species (the species tree
