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Data from: Efficient detection of repeating sites to accelerate phylogenetic likelihood calculations
- 负责人：
- DOI：
- doi:10.5061/dryad.8f0c8
- 摘要：
- The phylogenetic likelihood function is the major computational bottleneck in several applications of evolutionary biology suc
Data from: Complexity of the likelihood surface for a large DNA dataset
- 负责人：
- 关键词：
- DOI：
- doi:10.5061/dryad.708
- 摘要：
- Point of View
Data from: Penalized likelihood methods improve parameter estimates in occupancy models
- 负责人：
- DOI：
- doi:10.5061/dryad.t40f2
- 摘要：
- is popular in the literature, problems can occur when estimating the model parameters. In particular, the maximum likelihood estimates can exhibit bias and lar
Data from: Comparing evolutionary rates for different phenotypic traits on a phylogeny using likelihood
- 负责人：
- DOI：
- doi:10.5061/dryad.1117q
- 摘要：
- In recent years, likelihood-based approaches have been used with increasing frequency to evaluate macroevolutionary hypotheses
Data from: Genealogical working distributions for Bayesian model testing with phylogenetic uncertainty
- 负责人：
- DOI：
- doi:10.5061/dryad.8tm76
- 摘要：
- Marginal likelihood estimates to compare models using Bayes factors frequently accompany Bayesian phylogenetic inference. Approaches to estimate
Data from: Coalescent-based species tree inference from gene tree topologies under incomplete lineage sorting by maximum likelihood
- 负责人：
- DOI：
- doi:10.5061/dryad.240h7g8r
- 摘要：
- with maximum likelihood. I first describe an improved method for computing the probability of a gene tree topology given a species tree, which is much faster tha
Data from: SATé-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees
- 负责人：
- DOI：
- doi:10.5061/dryad.n9r3h
- 摘要：
- d maximum likelihood methods that treat gaps as missing data to estimate trees, and because we found a correlation between the quality of tree/alignment pairs
Data from: A partitioned likelihood analysis of swallowtail butterfly phylogeny (Lepidoptera: Papilionidae)
- 负责人：
- DOI：
- doi:10.5061/dryad.615
- 摘要：
- ch other and to Papilionidae were undisputed and undertook detailed likelihood analyses of alternative topologies. Following previous studies that hav
Data from: A general and efficient algorithm for the likelihood of diversification and discrete-trait evolutionary models
- 负责人：
- DOI：
- doi:10.5061/dryad.6vm72sm
- 摘要：
- compute the likelihood of various macroevolutionary models. Our algorithm applies to several diversification models, including birth-death models and mod
Data from: Robustness of the approximate likelihood of the protracted speciation model
- 负责人：
- DOI：
- doi:10.5061/dryad.20g1d
- 摘要：
- , by accounting for the fact that speciation takes time. A method to compute the likelihood for this model given a phylogeny is available and allows estimation
