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Data from: Using genomic location and coalescent simulation to investigate gene tree discordance in Medicago L.
- 负责人：
- DOI：
- doi:10.5061/dryad.85c0s
- 摘要：
- Several well-documented evolutionary processes are known to cause conflict between species-level phylogenies and gene-level phylogenies. Three
Data from: Resolving evolutionary relationships in closely related species with whole-genome sequencing data
- 负责人：
- DOI：
- doi:10.5061/dryad.b6gj8
- 摘要：
- such as incomplete lineage sorting and interspecific gene flow result in local gene genealogies that differ in their topology from the species tree
Data from: Disentangling methodological and biological sources of gene tree discordance on Oryza (Poaceae) chromosome 3
- 负责人：
- DOI：
- doi:10.5061/dryad.6169b
- 摘要：
- t led to biased gene trees were used. Several results may generalize to other data sets: we found that gene tree and species tree inference gave mor
Data from: Disentangling methodological and biological sources of gene tree discordance on Oryza (Poaceae) chromosome 3
- 负责人：
- DOI：
- doi:10.5061/dryad.6169b.1
- 摘要：
- t led to biased gene trees were used. Several results may generalize to other data sets: we found that gene tree and species tree inference gave mor
Data from: Phylogenomic analyses reveal a deep history of hybridization and polyploidy in the Neotropical genus Lachemilla (Rosaceae)
- 负责人：
- DOI：
- doi:10.5061/dryad.vj2s888
- 摘要：
- to clarify the relationships among the major groups of Lachemilla, and explored multiple sources of conflict between gene trees and species trees inferred
Data from: Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti
- 负责人：
- DOI：
- doi:10.5061/dryad.72c2g
- 摘要：
- alignments. Species tree inference consistently returned the same phylogeny, but gene tree discordance was high: 37% of gene trees having at least 90
Data from: SimPhy: phylogenomic simulation of gene, locus and species trees
- 负责人：
- DOI：
- doi:10.5061/dryad.707td
- 摘要：
- a hierarchical phylogenetic model in which the evolution of species, locus, and gene trees is governed by global and local parameters (e.g., genome-wide, species
Data from: Calibrating divergence times on species trees versus gene trees: implications for speciation history of Aphelocoma jays
- 负责人：
- DOI：
- doi:10.5061/dryad.1786
- 摘要：
- . Divergence times are estimated in the bird genus Aphelocoma to test whether speciation coincided with mountain uplift or glacial cycles. Gene trees and species trees
Data from: Coestimating reticulate phylogenies and gene trees from multilocus sequence data
- 负责人：
- Nakhleh, Luay
- 关键词：
- Multispecies network coalescent reticulation incomplete lineage sorting phylogenetic network Bayesian inference RJMCMC
- DOI：
- doi:10.5061/dryad.3h185
- 摘要：
- on a Bayesian method for sampling the parameters of this generative model, including the species phylogeny, gene trees, divergence times, and population sizes, from
Data from: Lateral gene transfer from the dead
- 负责人：
- DOI：
- doi:10.5061/dryad.27d0g
- 摘要：
- of a gene tree and recover the maximum likelihood reconciliation given the phylogeny of the sampled species. Examining 473 near universal gene families from
