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Data from: When do species-tree and concatenated estimates disagree? An empirical analysis with higher-level scincid lizard phylogeny
- 负责人：
- 关键词：
- DOI：
- doi:10.5061/dryad.331jq
- 摘要：
- estimates will differ. We predict such differences for branches in concatenated trees that are short, weakly supported, and have conflicting gene trees
Data from: Complete genome sequences provide a case study for the evaluation of gene-tree thinking
- 负责人：
- DOI：
- doi:10.5061/dryad.7c7q0
- 摘要：
- Complete genome sequences from a genus of Gammaproteobacteria, Shewanella, are used to generate a genome-wide exploration of the gene-tree species
and genetic basis of quantitative traits in trees
- 负责人：
- DOI：
- doi:10.5061/dryad.mr47gq3
- 摘要：
- e established to improve phenotypic traits of economic interest. In southern Sweden seeds used to create progeny tests were collected on about 3000 trees
Data from: Phylogenomic analyses reveal extensive gene flow within the magic flowers (Achimenes)
- 负责人：
- DOI：
- doi:10.5061/dryad.9202s
- 摘要：
- , we sequenced 12 transcriptomes. We used a variety of methods to infer the species tree, examine gene tree discordance, and infer patterns of gene flow. Key res
Data from: Probabilistic species tree distances: implementing the multispecies coalescent to compare species trees within the same model-based
- 负责人：
- DOI：
- doi:10.5061/dryad.rh4172f
- 摘要：
- models. Multispecies coalescent models (MSC) parameterize the discrete probability distribution of gene trees conditioned upon a species tree with a particular topology and set
Data from: Turning the crown upside down: gene tree parsimony roots the eukaryotic tree of life
- 负责人：
- Burleigh, J. Gordon
- DOI：
- doi:10.5061/dryad.11vq033v
- 摘要：
- ny genes. Here we reconstruct a rooted phylogeny of extant eukaryotes based on minimizing the number of duplications and losses among a collection of gene trees
Data from: Coalescent species delimitation in milksnakes (genus Lampropeltis) and impacts on phylogenetic comparative analyses
- 负责人：
- DOI：
- doi:10.5061/dryad.420h7
- 摘要：
- Both gene-tree discordance and unrecognized diversity are sources of error for accurate estimation of species trees, and can affect downstream
Data from: Phylogenetic and morphological diversity of the Etheostoma zonistium species complex with the description of a new species endemic
- 负责人：
- DOI：
- doi:10.5061/dryad.s7h6b
- 摘要：
- olve as sister species in the mtDNA gene tree. The two nuclear gene trees are much less resolved, but the S7 ribosomal protein intron 1 (S7) gene tree resolves Etheostoma
Data from: Genomic evidence of gene flow during reinforcement in Texas Phlox
- 负责人：
- DOI：
- doi:10.5061/dryad.r25s5
- 摘要：
- to determine the phylogenetic relationships between these species, and find extensive discordance among gene tree topologies across genes. We find evidence of
Data from: Analysis of a rapid evolutionary radiation using ultraconserved elements (UCEs): Evidence for a bias in some multi-species coales
- 负责人：
- DOI：
- doi:10.5061/dryad.p1m52
- 摘要：
- mitochondrial gene regions). Species tree methods exhibited troubling behavior. Two methods [Maximum Pseudolikelihood for Estimating Species Trees (MP-ES
