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Data from: Modeling central metabolism and energy biosynthesis across microbial life
- 负责人：
- DOI：
- doi:10.5061/dryad.gs51v
- 摘要：
- with phylogenetic analysis. Conclusions: We predict accurate energy yields based on our improved annotations in energy biosynthesis pathways and the implementation of diverse
Data from: Analysis of phylogenomic tree space resolves relationships among marsupial families
- 负责人：
- DOI：
- doi:10.5061/dryad.353q5
- 摘要：
- of the 22 extant marsupial families, we demonstrate the power of a method for identifying clusters of loci that support different phylogenetic tree
Data from: SATé-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees
- 负责人：
- DOI：
- doi:10.5061/dryad.n9r3h
- 摘要：
- Highly accurate estimation of phylogenetic trees for large datasets is difficult, in part because multiple sequence alignments must be accurate
Data from: Multiple morphological clocks and total-evidence tip-dating in mammals
- 负责人：
- DOI：
- doi:10.5061/dryad.3h4m5
- 摘要：
- phenotypic datasets become more commonplace, multi-clock approaches are feasible and can affect both divergence dates and phylogenetic relationships.
Data from: Cladogenetic and anagenetic models of chromosome number evolution: a Bayesian model averaging approach
- 负责人：
- DOI：
- doi:10.5061/dryad.46m4b
- 摘要：
- r, the ChromEvol approach assumes all changes occur anagenetically (along branches), and does not model events that are specifically cladogenetic. Cladogenetic change
Data from: Complex models of sequence evolution require accurate estimators as exemplified with the invariable site plus Gamma model
- 负责人：
- DOI：
- doi:10.5061/dryad.4j5c7
- 摘要：
- phylogenetic analyses. The proof that the invariable site plus continuous ? model is identifiable (model parameters can be inferred correctly given enough data) ha
Data from: Evaluating summary methods for multi-locus species tree estimation in the presence of incomplete lineage sorting
- 负责人：
- DOI：
- doi:10.5061/dryad.310q3
- 摘要：
- of ILS. Concatenation can be more accurate than the best summary methods in some cases (mostly when the gene trees have poor phylogenetic
Data from: Molecular systematics of the Philippine forest skinks (Squamata: Scincidae: Sphenomorphus): testing morphological hypotheses
- 负责人：
- 关键词：
- Sphenomorphus group;Sphenomorphus;Scincella;Lipinia;new genera;Parvoscincus;taxonomy;Papuascincus
- DOI：
- doi:10.5061/dryad.30064
- 摘要：
- on four mitochondrial and two nuclear genes to assess the group's biogeographical history in the archipelago and examine the phylogenetic validity of the current
Data from: Phylogenetic affiliation of SSU rRNA genes generated by massively parallel sequencing: new insights into the freshwater protist diversity
- 负责人：
- 关键词：
- Protozoa;protist
- DOI：
- doi:10.5061/dryad.66hc3
- 摘要：
- with a phylogenetic approach allowed to shed light on clades of freshwater protists rarely or never detected with classical molecular ecology approaches; and iii
Data from: Bayesian methods outperform parsimony but at the expense of precision in the estimation of phylogeny from discrete morphological data
- 负责人：
- DOI：
- doi:10.5061/dryad.10qf3
- 摘要：
- al accuracy, and implied-weights performs the most poorly. However, the Mk-model produces phylogenies that have less resolution than parsimony methods
