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Data from: Assessment of available anatomical characters for linking living mammals to fossil taxa in phylogenetic analyses
负责人:
关键词:
phylogenetic clustering;Topology;Total Evidence Method;extinct;discrete anatomical matrix
DOI:
doi:10.5061/dryad.qj552
摘要:
ters in living taxa, even in well-studied groups such as mammals. We investigated the number of coded anatomical characters available in phylogenetic matric
Data from: Bayesian species delimitation combining multiple genes and traits in a unified framework
负责人:
关键词:
Bayesian phylogenetic analysis;Brownian motion;BPP;gene flow;species delineation;speciation
DOI:
doi:10.5061/dryad.4gf03
摘要:
the accuracy of delimited taxa based on genetic data alone versus when integrated with phenotypic data. We can also evaluate how the integrati
Data from: Multiple sequence alignment averaging improves phylogeny reconstruction
负责人:
关键词:
Alignment reliability;multiple sequence alignment;phylogeny;Tree reconstruction
DOI:
doi:10.5061/dryad.4j1qt
摘要:
o demonstrated that the benefit of this filtering is often obscured by the resulting loss of phylogenetic signal. In this work we explore an approach, in which ins
Data from: Dental data perform relatively poorly in reconstructing mammal phylogenies: morphological partitions evaluated with molecular benchmarks
负责人:
关键词:
morphology;Teeth;phylogeny;Mammals;Homoplasy;osteology
DOI:
doi:10.5061/dryad.k23mq
摘要:
refinements to phylogenetic analyses that they permit, promise to improve the quality of all macroevolutionary studies that hinge on accurate trees.
Data from: Phylogenetic tree estimation with and without alignment: new distance methods and benchmarking
负责人:
关键词:
Pair hidden Markov models;phylogenetic inference;Alignment free;Distance-based phylogenetics;statistical alignment
DOI:
doi:10.5061/dryad.n5r49
摘要:
e alignment-free methods are equal to or more accurate than standard phylogenetic methods even in the presence of substantial alignment error.
Data from: Conserved genes, sampling error, and phylogenomic inference
负责人:
关键词:
Sampling error;Incongruence;Yeast;Systematic error;Strong phylogenetic signal;phylogenomics;Slowly-evolving genes
DOI:
doi:10.5061/dryad.157d7
摘要:
nodes at deep phylogenetic levels is contrary to widespread practice in recent studies (e.g., Li, C., Orti, G., et al. 2007, Jian, S., Soltis, P.S., et al
Data from: Probabilistic methods surpass parsimony when assessing clade support in phylogenetic analyses of discrete morphological data
负责人:
关键词:
phylogenetic analysis;morphology;Mk Model;parsimony;Bayesian;maximum likelihood
DOI:
doi:10.5061/dryad.8dd39
摘要:
models that achieve greater phylogenetic accuracy. Here, based on simulated and empirical datasets, we explore the relative efficacy of competi
Data from: Use of continuous traits can improve morphological phylogenetics
负责人:
关键词:
morphology;Paleontology;Bayesian;phylogenetics;Quantitative Characters
DOI:
doi:10.5061/dryad.40b70
摘要:
morphological evolution has not been well explored. Another major hurdle in morphological phylogenetics concerns the process of character coding of discrete charac
Data from: Bias in phylogenetic measurements of extinction and a case study of end-Permian tetrapods
负责人:
关键词:
Permian-Triassic mass extinction;tetrapods;Simulation;phylogenetic clustering
DOI:
doi:10.5061/dryad.208b1
摘要:
rent clades and time periods that can be made in the absence of detailed trait data. This phylogenetic approach is particularly suitable for vertebra
Data from: Selecting question-specific genes to reduce incongruence in phylogenomics: a case study of jawed vertebrate backbone phylogeny
负责人:
关键词:
phylogenomic analysis;phylogenomic;Callorhinchus milii;systematic bias;phylogenetic signal;vertebrates
DOI:
doi:10.5061/dryad.47v40
摘要:
both concatenation and coalescent-based frameworks. To evaluate the efficiency of extracting phylogenetic signals among different data filtering methods

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