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Data from: An updated global dataset for diet preferences in terrestrial mammals: testing the validity of extrapolation
- 负责人：
- Gainsbury, Alison
- DOI：
- doi:10.5061/dryad.qd450
- 摘要：
- on from phylogenetic relatives. 2. We collected dietary information for 1261 mammalian species for which data were extrapolated by Kissling et al. (2014
Data from: TreeFix: statistically informed gene tree error correction using species trees
- 负责人：
- DOI：
- doi:10.5061/dryad.44cb5
- 摘要：
- Accurate gene tree reconstruction is a fundamental problem in phylogenetics, with many important applications. However, sequence data alone oft
Data from: Parsimonious inference of hybridization in the presence of incomplete lineage sorting
- 负责人：
- Nakhleh, Luay
- 关键词：
- phylogenetic networks gene trees hybridization incomplete lineage sorting coalescent multi-labeled trees
- DOI：
- doi:10.5061/dryad.sr534
- 摘要：
- works from collections of gene-tree topologies under this criterion. This framework enables phylogenetic analyses while accounting for both hybridizati
Data from: Inference of adaptive shifts for multivariate correlated traits
- 负责人：
- DOI：
- doi:10.5061/dryad.60t0f
- 摘要：
- on on the tree. The method, freely available as an R-package (PhylogeneticEM) is fast, and can deal with missing values. We demonstrate its efficiency and accuracy
Data from: Modeling the mito-nuclear compatibility and its role in species identification
- 负责人：
- DOI：
- doi:10.5061/dryad.2ngf1vhk7
- 摘要：
- to empirical data from copepods (T. californicus). We find good qualitative agreement in the geographic patterns and the topology of the phylogenetic tree
Data from: Assessing Progress in Systematics with Continuous Jackknife Function Analysis
- 负责人：
- DOI：
- doi:10.5061/dryad.829
- 摘要：
- Systematists expect their hypotheses to be asymptotically precise. As the number of phylogenetically informative characters for a set of taxa
Data from: Coestimating reticulate phylogenies and gene trees from multilocus sequence data
- 负责人：
- Nakhleh, Luay
- 关键词：
- Multispecies network coalescent reticulation incomplete lineage sorting phylogenetic network Bayesian inference RJMCMC
- DOI：
- doi:10.5061/dryad.3h185
- 摘要：
- s demonstrate the significance of not only co-estimating species phylogenies and gene trees, but also accounting for reticulation and ILS simultaneously. In particu
Data from: Short tree, long tree, right tree, wrong tree: new acquisition bias corrections for inferring SNP phylogenies
- 负责人：
- 关键词：
- maximum likelihood;reconstituted DNA;Phrynosomatidae;ddRADseq;conditional likelihood;Phrynosoma
- DOI：
- doi:10.5061/dryad.t9r3g
- 摘要：
- family Phrynosomatidae, to investigate the accuracy of RAD loci for phylogenetic inference. We compare the two primary ways RAD loci are used duri
Data from: Data set incongruence and correlated character evolution: an example of functional convergence in the hind-limbs of stifftail diving ducks
- 负责人：
- DOI：
- doi:10.5061/dryad.530
- 摘要：
- The unwitting inclusion of convergent characters in phylogenetic estimates poses a serious problem for efforts to recover phylogeny. Converge
Data from: Markov-modulated continuous-time Markov chains to identify site- and branch-specific evolutionary variation in BEAST
- 负责人：
- DOI：
- doi:10.5061/dryad.230s5h0
- 摘要：
- Markov models of character substitution on phylogenies form the foundation of phylogenetic inference frameworks. Early models made the simplifying
