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Data from: Combining data sets with different phylogenetic histories
负责人:
关键词:
phylogenetic accuracy;Combined analysis;computer simulation;separate analysis;consensus analysis;Sceloporus
DOI:
doi:10.5061/dryad.123
摘要:
ween phylogenetic histories is small and the estimates of the underlying histories are imperfect (few characters and/or high homoplasy), and (2) combine
Data from: Congruence versus phylogenetic accuracy: revisiting the incongruence length difference test
负责人:
关键词:
DOI:
doi:10.5061/dryad.460rp51
摘要:
d in phylogenetic reconstruction (Cunningham, 1997b), and combining data is an appropriate way of dealing with random topological differences that are attributable to sampling error
Data from: Reconstructing phylogeny from reduced-representation genome sequencing data without assembly or alignment
负责人:
关键词:
Quercus;alignment-free;assembly-free;RADseq;phylogenomics;missing data
DOI:
doi:10.5061/dryad.r0hq0
摘要:
selection improved the accuracy of phylogenetic construction in every simulated scenario and the two real datasets, making AAF as good or better tha
Data from: Testing Phylogenetic Methods with Tree Congruence: Phylogenetic Analysis of Polymorphic Morphological Characters in Phrynosomatid Lizards
负责人:
关键词:
polymorphic characters;Likelihood;morphology;distance;parsimony;accuracy;congruence
DOI:
doi:10.5061/dryad.111
摘要:
Congruence between trees from separately analyzed data sets is a powerful approach for assessing the performance of phylogenetic methods but ha
Data from: Phylogenetic Congruence and Discordance Among One Morphological and Three Molecular Data Sets from Pontederiaceae
负责人:
关键词:
chloroplast DNA;morphology;Pontederiaceae;ndhF;Incongruence;rbcL;congruence tests
DOI:
doi:10.5061/dryad.116
摘要:
the phylogenetic history of the Pickerelweed family Pontederiaceae. The chloroplast data are converging to a single tree, presumably the true chloroplast phylogeny
Data from: Genealogical working distributions for Bayesian model testing with phylogenetic uncertainty
负责人:
关键词:
working distribution;marginal likelihood;MCMC;phylogenetics;Bayes factor;Bayesian inference;coalescent model
DOI:
doi:10.5061/dryad.8tm76
摘要:
o Bayesian phylogenetics has tremendously improved the accuracy of model selection. These sampling techniques are now used to evaluate complex evoluti
Data from: APPLES: Scalable distance-based phylogenetic placement with or without alignments
负责人:
关键词:
genome skimming;Distance-based methods;phylogenetic placement
DOI:
doi:10.5061/dryad.78nf7dq
摘要:
of phylogenetic placement exist, but these methods are not scalable to reference trees with many thousands of leaves, limiting their ability to enjoy benefits of dense
Data from: Improving spatial predictions of taxonomic, functional and phylogenetic diversity
负责人:
关键词:
Mountain grassland;ecological assembly rules;S?rensen dissimilarity index;stacked species distribution models;plant traits;vegetative height;leaf area;macroecological models;similarity effect;Assemblage modelling
DOI:
doi:10.5061/dryad.cn921
摘要:
es. In particular, fair predictions of the taxonomic composition by SSDM-MEM led to increasingly accurate predictions of the functional and phylogenetic
Data from: Effective online Bayesian phylogenetics via sequential Monte Carlo with guided proposals
负责人:
关键词:
phylogenetics;sequential Monte Carlo;Online Inference;Bayesian inference
DOI:
doi:10.5061/dryad.n7n85
摘要:
. Current software packages for Bayesian phylogenetic inference are unable to quickly incorporate new sequences as they become available, making them less use
Data from: Failure of the ILD to determine data combinability for slow loris phylogeny
负责人:
关键词:
partition homogeneity test;morphology;lorises;molecules;incongruence length difference;galagos;conditional data combination
DOI:
doi:10.5061/dryad.656
摘要:
ons, an inverse relationship between congruence and phylogenetic accuracy is observed. Nearly all combined analyses that recover monophyly indicate strong

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