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Data from: On the optimal trimming of high-throughput mRNA sequence data
负责人:
关键词:
Trinity;genomics;RNAseq
DOI:
doi:10.5061/dryad.7rm34
摘要:
The widespread and rapid adoption of high-throughput sequencing technologies has afforded researchers the opportunity to gain a deep understanding
Data from: Genomic distribution and estimation of nucleotide diversity in natural populations: perspectives from the collared flycatcher
负责人:
关键词:
Genomics\/Proteomics;Ficedula albicollis;molecular evolution;Birds;Bioinfomatics\/Phyloinfomatics;Aves;Population Genetics - Empirical
DOI:
doi:10.5061/dryad.1n84v
摘要:
varied extensively across the genome (95% confidence interval for 200 kb windows = 0.0013-0.0053). Diversity was related to selective constraint such tha
Data from: Mode and tempo of sequence and floral evolution within the Anserineae
负责人:
关键词:
Insertion\/Deletion Sequence Evolution;Beta vulgare;floral development;Spinacia turkestanica;Blitum bonus-henricus;Spinacia oleracea;Spinacia tetrandra;Floral Organ Identity Genes;Blitum;Chenopodiaceae;dioecy;Blitum virgatum;Blitum nuttalianum;Spinacia;Anserineae;Chenoodium album
DOI:
doi:10.5061/dryad.2vh4h
摘要:
d nucleotide substitution rates are not driving protein evolution, in contrast to evidence of protein sequence and structure evolution driven by indels. There is no footprint
Data from: Fine-Scale Mapping of Recombination Rate in Drosophila Refines its Correlation to Diversity and Divergence
负责人:
关键词:
crossing over;variation
DOI:
doi:10.5061/dryad.484
摘要:
this relationship. Regional recombination rates also correlate with nucleotide differences between human and chimpanzee, consistent with models where recombinati
Data from: Next-generation sampling: pairing genomics with herbarium specimens provides species-level signal in Solidago (Asteraceae)
负责人:
关键词:
next-generation sampling;genotyping by sequencing;species delimitation;herbarium specimens;Solidago
DOI:
doi:10.5061/dryad.16pj5
摘要:
is assessed in the notoriously difficult genus Solidago (Asteraceae) by attempting to obtain an informative single-nucleotide polymorphism data set from a se
Data from: The Solanum commersonii genome sequence provides insights into adaptation to stress conditions and genome evolution of wild potato
负责人:
Aversano, Riccardo
关键词:
DOI:
doi:10.5061/dryad.gf52g00
摘要:
chromosomes, using the potato (Solanum tuberosum) genome sequence as a reference. Compared with potato, S. commersonii shows a striking reducti
Data from: Comparative genomics of Methicillin-resistant Staphylococcus aureus ST239: distinct geographical variants in Beijing and Hong Kong
负责人:
关键词:
WGS;phylogenetic tree;SNP;MRSA;Staphylococcus aureus
DOI:
doi:10.5061/dryad.12773
摘要:
at single nucleotide polymorphism (SNP), core gene and MGE levels. The results suggest that ST239 strains isolated in Hong Kong since the 1990s belong to the Asian clade, present ma
Data from: Genome-wide single nucleotide polymorphism scan suggests adaptation to urbanization in an important pollinator, the red-tailed bumblebee
负责人:
关键词:
landscape genomics;Bombus lapidarius;local adaptation;genotype-environment association;RAD-seq;urban evolutionary biology
DOI:
doi:10.5061/dryad.1hn0951
摘要:
ve regimes. Here, using 110,314 single nucleotide polymorphisms (SNPs) generated by restriction-site associated DNA sequencing (RAD-seq), we investi
Data from: Single nucleotide polymorphism discovery via genotyping by sequencing to assess population genetic structure and r
负责人:
关键词:
genotyping by sequencing;population genetics;Andropogon gerardii;polyploidy;UNEAK;Poaceae;big bluestem;tallgrass prairie
DOI:
doi:10.5061/dryad.05qs7
摘要:
or multiple times in Andropogon gerardii, a widespread, North American grass with two predominant cytotypes. Methods. Genotyping-by-sequencing was use

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