Data from: ModelOMatic: fast and automated comparison between RY, nucleotide, amino acid, and codon substitution models

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关键词：

model selection;phylogenetics;substitution models;AIC

DOI：

doi:10.5061/dryad.gq0pb

摘要：

for inference is of critical importance, and there are established methods for model selection conditioned on a particular type of data, such as nucleotides

Data from: A branch-heterogeneous model of protein evolution for efficient inference of ancestral sequences

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关键词：

phylogeny;Optimal Growth Temperature;Non-homogeneous model;phylogenomics;Ancestral Sequence Reconstruction

DOI：

doi:10.5061/dryad.7h66k

摘要：

Most models of nucleotide or amino acid substitution used in phylogenetic studies assume that the evolutionary process has been homogeneous ac

Data from: Testing pipelines for genome-wide SNP calling from Genotyping-By-Sequencing (GBS) data for Pinus ponderosa

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关键词：

pipeline;reference-based;SNP;Pinus ponderosa;de novo;now;GBS

DOI：

doi:10.5061/dryad.6fv8fb4

摘要：

-effective genotyping method. However, the short-read fragments produced must be aligned in order to identify sequence variants. While previous studies have sh

(Syncerus caffer), using next generation sequencing

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关键词：

molecular markers;disease ecology;population genomics;conservation;Syncerus caffer

DOI：

doi:10.5061/dryad.q8q11

摘要：

, to depict subtle population genetic structure for a better understanding of buffalo population dynamics. In total, 18.5 million DNA sequences of 76 bp wer

Data from: Remarkably divergent regions punctuate the genome assembly of the Caenorhabditis elegans Hawaiian strain CB4856

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关键词：

Caenorhabditis elegans;Evolution;genome assembly;variation

DOI：

doi:10.5061/dryad.1k8kq

摘要：

ng a variety of resources and strategies. The CB4856 genome when compared against the N2 reference has 327,050 single nucleotide variants (SNVs) and 79,529

Data from: Phylogeography and species delimitation of Cherax destructor (Decapoda: Parastacidae) using genome-wide SNPs

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关键词：

DArTseq;genotyping by sequencing;single nucleotide polymorphism;ddRAD;Pleistocene to present;Pleistocene to Holocene;Australian Yabby;Cherax destructor

DOI：

doi:10.5061/dryad.21mb45j

摘要：

Cherax is a genus of 58 species of decapod crustaceans that are widespread across Australia and New Guinea. We use single-nucleotide

Data from: Development of an Arabis alpina genomic contig sequence dataset and application to single nucleotide polymorphisms discovery

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关键词：

Genomics\/Proteomics;Bioinfomatics\/Phyloinfomatics;Angiosperms;Ecological Genetics

DOI：

doi:10.5061/dryad.6gc6h

摘要：

conserved eukaryotic genes. Regions presenting high nucleic sequence identity with 77% of the close relative Arabidopsis thaliana's genes wer

Data from: Ribosomal DNA sequence heterogeneity reflects intra-species phylogenies and predicts genome structure in two contrasting yeast species

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关键词：

whole genome sequencing;phylogenetic analysis;genome hybridisation;ribosomal DNA;concerted evolution;Yeast

DOI：

doi:10.5061/dryad.0674n

摘要：

al Single Nucleotide Polymorphisms, a type of sequence variation found only in repetitive genomic regions, in identifying key evolutionary features such as genome hybridisation events

Data from: Genome-wide variation in nucleotides and retrotransposons in alpine populations of Arabis alpina (Brassicaceae)

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关键词：

Arabis alpina<\/i>;Single-nucleotide polymorphisms;linkage disequilibrium;whole-genome re-sequencing;Arabis alpina;Transposable elements;Genome-wide diversity