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Data from: Assembly of root-associated bacteria communities: interactions between abiotic and biotic factors
负责人:
关键词:
Deschampsia cespitosa;root;Geum rossii;bacteria;nitrogen;alpine tundra
DOI:
doi:10.5061/dryad.7535k
摘要:
ng 454 pyrosequencing, we examined RAB communities from two dominant alpine tundra plants, Geum rossii and Deschampsia cespitosa, under control, N addition
pyrosequencing
负责人:
关键词:
metagenomics;DNA Barcoding;Mus musculus;Quaternary;bacteria;house mouse;Community Ecology;speciation
DOI:
doi:10.5061/dryad.018g4
摘要:
and variation in wild populations is poorly understood. Using 454 pyrosequencing, we performed 16S rDNA GTM barcoding for 30 wild house mice (Mus musculus
Data from: A comparison between transcriptome sequencing and 16S metagenomics for detection of bacterial pathogens in wildlife
负责人:
关键词:
NGS RNA-Seq 16S metagenomics metabarcoding 454-pyrosequencing MiSeq bacteria rodent-borne zoonoses coinfections pathobiome
DOI:
doi:10.5061/dryad.50125
摘要:
-MiSeq). In contrast, 21 of these pathogens went unnoticed when the 16S-metagenomics approach was processed via 454-pyrosequencing (16S-454). In addition
Data from: The effects of contig length and depth on the estimation of SNP frequencies, and the relative abundance of SNPs in protein-coding
负责人:
关键词:
454 sequencing;Contig depth;SNP frequency;model selection;genomics;transcriptome;Ambystoma tigrinum;Contig length
DOI:
doi:10.5061/dryad.5pd17
摘要:
methods of SNP frequency estimation. RESULTS: We used 454 pyrosequencing to identify 2,980 putative SNPs in the eastern tiger salamander (Ambystoma tigrinum
Data from: Seasonal diversity and dynamics of haptophytes in the Skagerrak, Norway, explored by high-throughput sequencing
负责人:
关键词:
Environmental DNA;metagenomics;Protists;Microbial Biology;Pavlovophyceae;Prymnesiophyceae;haptophytes;Bioinfomatics\/Phyloinfomatics;Haptophyta;population dynamics
DOI:
doi:10.5061/dryad.b8d21
摘要:
operational taxonomic units (OTUs), from c. 400.000 454 pyrosequencing reads, after rigorous bioinformatic filtering and clustering at 99.5%. Most OTUs represented unc
Data from: A metagenetic approach for revealing community structure of marine planktonic copepods
负责人:
关键词:
metagenetics;Copepoda
DOI:
doi:10.5061/dryad.5p1j3
摘要:
ach for revealing the community structure of marine planktonic copepods using 454 pyrosequencing of nuclear large subunit ribosomal DNA. We determined an appro
Data from: Two highly informative dinucleotide SSR multiplexes for the conifer Larix decidua (European larch)
负责人:
关键词:
conservation genetics;microsatellites;population genetics;Quaternary;Larix decidua;Ecological Genetics;Gymnosperms
DOI:
doi:10.5061/dryad.08507r35
摘要:
microsatellites obtained by pyrosequencing of an enriched microsatellite library and subsequent marker candidate selection. As we wanted to target highly
by pyrosequencing
负责人:
关键词:
454;candidate gene;genomics;cDNA;respiration;Ambystoma tigrinum;amphibian
DOI:
doi:10.5061/dryad.69t48k87
摘要:
s. We do so with a hierarchical experimental design that captures variation in expression among genes, among tissues, and among individuals. Using 454 pyrosequencing, we pro
Data from: Long-term balanced fertilization improves the soil microbial functional diversity in a phosphorus-limited paddy soil
负责人:
关键词:
long-term fertilization chemical fertilizer GeoChip 16S rRNA gene pyrosequencing soil microbial community
DOI:
doi:10.5061/dryad.t64s0
摘要:
and environmental sciences and is critical for linking soil microbial flora with soil functions. In this study, 16S rRNA gene pyrosequencing and a func
Data from: Moorean and Tahitian Partula tree snail survival after a mass extinction: new genomic insights using museum specimens
负责人:
关键词:
Partula taeniata;Partula hyalina;ddRADseq;Partula clara
DOI:
doi:10.5061/dryad.gs0gv
摘要:
t clade in earlier mitochondrial phylogenies. Using Next Generation Sequencing (NGS) double digested Restriction Associated DNA sequencing (ddRADse

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