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Data from: Simulated data for genomic selection and genome-wide association studies using a combination of coalescent and gene drop methods
- 负责人：
- 关键词：
- simulation method genome-wide association studies (GWAS) shared data resources GenPred quantitative trait loci (QTL) pedigrees
- DOI：
- doi:10.5061/dryad.nm290
- 摘要：
- An approach is described for simulating data sequence, genotype, and phenotype data to study genomic selection and genome-wide associati
Data from: The root of flowering plants and total evidence
- 负责人：
- DOI：
- doi:10.5061/dryad.vg97f
- 摘要：
- multiple-sequence alignments that have a poor fit to time-reversible substitution models. These sites exhibit significant levels of homoplasy, compositi
Data from: Coinfection timing drives host population dynamics through changes in virulence
- 负责人：
- DOI：
- doi:10.5061/dryad.gj4rp
- 摘要：
- h within-host competition and disease severity. However, it is unclear to what extent coinfection timing might be important to consider when modeling parasite impacts
Data from: A simulation-based evaluation of tip-dating under the fossilized birth-death process
- 负责人：
- DOI：
- doi:10.5061/dryad.q2527ts
- 摘要：
- s for morphological characters. We conducted a simulation study to evaluate the performance of tip-dating using the fossilized birth-death model. We simulated fossil occurrence
Data from: Interpreting the estimated timing of migration events between hybridizing species
- 负责人：
- DOI：
- doi:10.5061/dryad.8444
- 摘要：
- s, and these estimates have been used to infer the timing of introgression and mode of speciation. We use simulated datasets to examine the degree to which
Data from: SimPhy: phylogenomic simulation of gene, locus and species trees
- 负责人：
- DOI：
- doi:10.5061/dryad.707td
- 摘要：
- locus sequence alignments under a plethora of substitution models using the program INDELible. We validate SimPhy's output using theoretical expectations and other programs
Data from: Overestimation of the adaptive substitution rate in fluctuating populations
- 负责人：
- DOI：
- doi:10.5061/dryad.85qb2r1
- 摘要：
- population size (N) of the considered species. We show via simulations that ancient demographic fluctuations can generate severe overestimati
Data from: Accounting for genotype uncertainty in the estimation of allele frequencies in autopolyploids
- 负责人：
- DOI：
- doi:10.5061/dryad.t297p
- 摘要：
- on in a unified inferential framework using a hierarchical Bayesian model to sum over genotype uncertainty. Simulated data sets were generated under var
Data from: Inferring the mode of origin of polyploid species from next-generation sequence data
- 负责人：
- DOI：
- doi:10.5061/dryad.g611t
- 摘要：
- s been limited by a need for analyses of allele segregation at multiple loci using crosses. The increasing availability of sequence data for non-model
Data from: Elevated substitution rate estimates from ancient DNA: model violation and bias of Bayesian methods
- 负责人：
- DOI：
- doi:10.5061/dryad.1355
- 摘要：
- The increasing ability to extract and sequence DNA from non-contemporaneous tissue offers biologists the opportunity to analyze ancient DNA (aDNA
