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Data from: Simple chained guide trees give poorer multiple sequence alignments than inferred trees in simulation and phylogenetic benchmarks
- 负责人：
- DOI：
- doi:10.5061/dryad.4r5b8
- 摘要：
- Multiple sequence aligners typically work by progressively aligning the most closely related sequences or group of sequences according to guide trees
Data from: Identifying consistent allele frequency differences in studies of stratified populations
- 负责人：
- DOI：
- doi:10.5061/dryad.mn0tv
- 摘要：
- binomial error structure) with attractive properties for the analysis of allele frequency differences and re-analyse a published dataset. 3. The simulations sh
Data from: Ensembler: enabling high-throughput molecular simulations at the superfamily scale
- 负责人：
- DOI：
- doi:10.5061/dryad.7fg32
- 摘要：
- -throughput simulation in the genomics era. Ensembler takes any set of sequences—from a single sequence to an entire superfamily—and shepherds them through var
Data from: A branch-heterogeneous model of protein evolution for efficient inference of ancestral sequences
- 负责人：
- DOI：
- doi:10.5061/dryad.7h66k
- 摘要：
- . The model was thoroughly tested on both simulated and biological data sets to show its high performance in terms of data fitting and CPU time. COaLA
Data from: Bayesian species delimitation can be robust to guide tree inference errors
- 负责人：
- DOI：
- doi:10.5061/dryad.m1r32
- 摘要：
- on tree is used as the guide tree (Fujita and Leaché, 2011). Here we conduct a simulation study to examine the performance of the method under mor
Data from: Heterogeneity in genetic diversity among non-coding loci fails to fit neutral coalescent models of population history
- 负责人：
- DOI：
- doi:10.5061/dryad.nv5v1v59
- 摘要：
- s in substitution rates. Using two different coalescent methods to infer models of population history and then simulating neutral genetic diversity under these model
Data from: An upper bound for accuracy of prediction using GBLUP
- 负责人：
- 关键词：
- simulated genotypes
- DOI：
- doi:10.5061/dryad.3k8g5
- 摘要：
- or rare QTL alleles through simulations. Haplotypes derived from whole-genome sequence of 85 Caucasian individuals from the 1,000 Genomes Project were use
Data from: A new method to scan genomes for introgression in a secondary contact model
- 负责人：
- DOI：
- doi:10.5061/dryad.s5v7b
- 摘要：
- a simple DNA sequence measure, called Gmin, which is designed to identify genomic regions experiencing introgression in a secondary contact model. Gmin
Data from: The stratigraphy of mass extinction
- 负责人：
- DOI：
- doi:10.5061/dryad.1mg27
- 摘要：
- s generally precede the time of extinction. Numerical simulations with constant extinction demonstrate that last occurrences are not randomly distributed, but tend
Data from: Distinguishing migration from isolation using genes with intragenic recombination: detecting introgression in the Drosophila simula
- 负责人：
- DOI：
- doi:10.5061/dryad.67f8v
- 摘要：
- flow. Power and false positive rate for tests based on these statistics are studied by simulation. Results: The application of these tests to populations from
