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Data from: Robustness to divergence time underestimation when inferring species trees from estimated gene trees
负责人:
关键词:
Robinson-Foulds;false negative;statistical consistency;maximum likelihood;Bayesian;phylogenetics;false positive
DOI:
doi:10.5061/dryad.65tn4
摘要:
ng maximum likelihood (ML) and Bayesian approaches. Among the methods examined, we found that topology-based methods often performed better using ML gene trees and method
Data from: An evaluation of a novel estimator of linkage disequilibrium
负责人:
关键词:
linkage disequilibrium tetra-choric correlation frequency-dependence Holstein-Friesian HapMap coalescent
DOI:
doi:10.5061/dryad.t9f2g
摘要:
a new estimator of a LD parameter (ρ^2) that is much easier to compute than a maximum likelihood (or Bayesian) estimate of a tetra-choric correlati
Data from: Time-dependent speciation and extinction from phylogenies: a least squares approach
负责人:
关键词:
extinction;Agamidae;extinction;Birth-death;phylogeny;Catarrhinae;diversification;speciation;Birth-death;speciation
DOI:
doi:10.5061/dryad.7891
摘要:
on previous published works, I derive maximum likelihood estimators. Some limitations of the likelihood approach are described, and a fitting procedure based
Data from: A likelihood-based comparison of population histories in a parasitoid guild
负责人:
关键词:
comparative phylogeography;Late Pleistocene;Mesopolobus amaenus;Hobbya stenonota;Population Divergence;Cecidostiba semifascia;community assembly;maximum likelihood;Cecidostiba fungosa
DOI:
doi:10.5061/dryad.0g0fs
摘要:
galls. We develop a likelihood method to numerically estimate models of divergence between three populations from multilocus data. We investi
Data from: Estimating genotyping errors from genotype and reconstructed pedigree data
负责人:
关键词:
DOI:
doi:10.5061/dryad.vv0gg
摘要:
le from natural populations in the wild. 3. I proposed a maximum likelihood method to reconstruct pedigrees from genotype data with errors occurring
Data from: Local molecular clocks in three nuclear genes: divergence times for rodents and other mammals and incompatibility among fossil calibrations.
负责人:
关键词:
Placentalia;vWF;Rodentia;A2AB;Eutheria;Mammalia;Supermatrix;IRBP;Glires;phylogeny;molecular dating;maximum likelihood;Cenozoic
DOI:
doi:10.5061/dryad.8502
摘要:
ents. Using seven independent calibration points and a maximum-likelihood framework, we evaluated whether molecular and paleontological estimates of mammali
Data from: Object recognition and localization from 3D point clouds by maximum-likelihood estimation
负责人:
关键词:
object recognition;Pose estimation;Industrial Inspection;Fringe projection 3D scanning
DOI:
doi:10.5061/dryad.37k3n
摘要:
We present an algorithm based on maximum-likelihood analysis for the automated recognition of objects, and estimation of their pose, from
Data from: A general model for estimating macroevolutionary landscapes
负责人:
关键词:
diffusion;selection;bounds;Macroevolution;Adaptation;FPK model;MCMC methods;maximum-likelihood estimation;phylogenetic comparative data
DOI:
doi:10.5061/dryad.28g37
摘要:
of parameter inference. We provide R code to fit the model to empirical data using either maximum-likelihood or Bayesian estimation, and illustrate the use of this cod
Data from: Crayfish molecular systematics: using a combination of procedures to estimate phylogeny
负责人:
关键词:
parsimony;phylogeny reconstruction;crayfish;Mitochondrial DNA;Orconectes;molecular systematics
DOI:
doi:10.5061/dryad.716
摘要:
of phylogenetic relationships using maximum-parsimony, maximum-likelihood, and neighbor-joining methods. The estimated trees were used to examine systematic hypotheses relati
Data from: Effectiveness of phylogenomic data and coalescent species-tree methods for resolving difficult nodes in the phylogeny of advanced snakes
负责人:
关键词:
systematics;Serpentes
DOI:
doi:10.5061/dryad.rb5nc
摘要:
with ?100% coverage (?0% missing data) for 31 major lineages. We estimate phylogenies using neighbor joining, maximum parsimony, maximum likelihood, and thr

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