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Data from: Complex models of sequence evolution require accurate estimators as exemplified with the invariable site plus Gamma model
- 负责人：
- DOI：
- doi:10.5061/dryad.4j5c7
- 摘要：
- The invariable site plus ? model is widely used to model rate heterogeneity among alignment sites in maximum likelihood and Bayes
Data from: Inferring bounded evolution in phenotypic characters from phylogenetic comparative data
- 负责人：
- DOI：
- doi:10.5061/dryad.k974s
- 摘要：
- , as well as the associated R code. Numerical simulations show that BBM achieves good performance: parameter estimation is generally accurate but more importantly BBM
Data from: Multilocus estimation of selfing and its heritability
- 负责人：
- DOI：
- doi:10.5061/dryad.nf2c425n
- 摘要：
- e used to give maximum-likelihood estimates of S and h^2 in the presence of scoring artifacts. Our multilocus estimation of selfing rate
Data from: Probabilistic methods surpass parsimony when assessing clade support in phylogenetic analyses of discrete morphological data
- 负责人：
- DOI：
- doi:10.5061/dryad.8dd39
- 摘要：
- remains the least accurate method. However, Maximum Likelihood is less precise than Bayesian phylogeny estimation, and Bayesian inference recaptures mor
Data from: Assessing parameter identifiability in phylogenetic models using Data Cloning
- 负责人：
- DOI：
- doi:10.5061/dryad.rr6400b4
- 摘要：
- e, we illustrate how Data Cloning (DC), a recently developed methodology to compute the Maximum Likelihood estimates along with their asymptotic variance, can be use
Data from: Comparing evolutionary rates between trees, clades, & traits
- 负责人：
- DOI：
- doi:10.5061/dryad.5st8m
- 摘要：
- the typical downward bias expected for maximum likelihood estimates of the variance, but only for very small trees. We find that evolutionary rates ar
Data from: Somatic deleterious mutation rate in a woody plant: estimation from phenotypic data
- 负责人：
- DOI：
- doi:10.5061/dryad.t8q7t
- 摘要：
- was significantly different from zero for fruit set. We developed a maximum likelihood procedure to estimate somatic mutation parameters from AD
Data from: Evaluating summary methods for multi-locus species tree estimation in the presence of incomplete lineage sorting
- 负责人：
- DOI：
- doi:10.5061/dryad.310q3
- 摘要：
- igned to address gene tree discordance. In this paper, we report on a study to evaluate MP-EST – one of the most popular species tree estimation methods des
Data from: Phylogeny of Saxifragales (angiosperms, eudicots): analysis of a rapid, ancient radiation
- 负责人：
- DOI：
- doi:10.5061/dryad.684
- 摘要：
- ng an array of methods that explicitly incorporate assumptions about evolutionary process (weighted maximum parsimony, maximum likelihood, LogDet/parali
Data from: Quantifying age-dependent extinction from species phylogenies
- 负责人：
- DOI：
- doi:10.5061/dryad.7894h
- 摘要：
- esent here a computational framework to quantify age-dependent extinction through maximum likelihood parameter estimation based on phylogenetic trees
