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Data from: Environmental DNA analysis of river herring in Chesapeake Bay: a powerful tool for monitoring threatened keystone species
负责人:
关键词:
anadramous;Alewife;blueback herring;Alosa psuedoharengus;Alosa aestivalis;qPCR;eDNA;Monitoring
DOI:
doi:10.5061/dryad.n60t8b3
摘要:
e developed and field-tested a qPCR assay to detect eDNA from alewife and blueback herring (collectively known as ‘river herring’), comparing eDNA-based
Data from: Long-range PCR allows sequencing of mitochondrial genomes from environmental DNA
负责人:
关键词:
mitogenome sequencing;Actinopterygii;eDNA
DOI:
doi:10.5061/dryad.q5gg0
摘要:
ny problems associated with identification of species from short-fragment PCR amplicon-based methods.
Data from: Detection of invasive mosquito vectors using environmental DNA (eDNA) from water samples
负责人:
关键词:
Aedes albopictus;Culicidae;Aedes koreicus;detection probability;vector;eDNA;Aedes japonicus;mosquito
DOI:
doi:10.5061/dryad.22782
摘要:
h molecular methods, confirming the reliability and efficiency of alternative eDNA-based techniques for the early and unambiguous detection and surveillance of invasive
Data from: Phylogenetic affiliation of SSU rRNA genes generated by massively parallel sequencing: new insights into the freshwater protist diversity
负责人:
关键词:
Protozoa;protist
DOI:
doi:10.5061/dryad.66hc3
摘要:
t of this work, a tree-based method was compared with different approaches of taxonomic affiliation (BLAST and RDP) of 18S rRNA gene sequences and was shown to be the mos
Data from: ‘True’ null allele detection in microsatellite loci: a comparison of methods, assessment of difficulties, and survey of poss
负责人:
关键词:
microsatellite loci;NullAlleleGenerator;genetic diversity estimates;null allele detection;simulated null alleles;genotyping errors
DOI:
doi:10.5061/dryad.s571g
摘要:
and to provide improvements. We applied several approaches to identify the ‘true’ null alleles based on the predictions made by five different methods, used either
Data from: Development of a PCR-RFLP assay to identify Drosophila melanogaster among field-collected larvae
负责人:
Raquin Vincent
关键词:
Fruit fly larvae field samples PCR-RFLP taxonomic identification
DOI:
doi:10.5061/dryad.pm71k02
摘要:
animal physiology, development or host-microbe interactions. While adult flies can be easily assigned to a given Drosophila species based
Data from: Identification of Swedish mosquitoes based on molecular barcoding of the COI gene and SNP analysis
负责人:
关键词:
DNA Barcoding;Biomedicine;insects;Diptera: Culicidae;Bioinfomatics\/Phyloinfomatics;Comparative Biology;Ecological Genetics
DOI:
doi:10.5061/dryad.qb4gs
摘要:
and benchmarking of phenetic classifications, and finally to develop a hierarchical PCR-based typing scheme based on single nucleotide polymorphism sites (SNPs
Data from: ITS1: a DNA barcode better than ITS2 in eukaryotes?
负责人:
关键词:
DOI:
doi:10.5061/dryad.n56t9
摘要:
, and 19,060 species, were analyzed. Using similarity-based methods, we calculated species discrimination efficiencies for ITS1 and ITS2 in all major groups
Data from: Estimating fish abundance and biomass from eDNA concentrations: variability among capture methods and environmental conditions
负责人:
Anais Lacoursière-Roussel
关键词:
Conservation Genetics Fish Species detection qPCR Water sampling Salmonid
DOI:
doi:10.5061/dryad.46sm5
摘要:
the importance of adequate filters to quantify fish abundance based on the eDNA method. This study supports the importance of including water temperature
Data from: Ecosystem biomonitoring with eDNA: metabarcoding across the tree of life in a tropical marine environment
负责人:
关键词:
eukaryotes;ecosystem based management;biodiversity;prokaryotes;Environmental DNA;shotgun sequencing
DOI:
doi:10.5061/dryad.qq11c
摘要:
of this method for assessing eukaryotic diversity. In contrast, using ‘tree of life’ (ToL) metabarcoding and 20-fold fewer sequencing reads, we could detect 287

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