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Data from: 18S rRNA V9 metabarcoding for diet characterization: a critical evaluation with two sympatric zooplanktivorous fish species
负责人:
关键词:
DOI:
doi:10.5061/dryad.2p1t8
摘要:
. The high sensitivity and semi-quantitative nature of the 18S V9 metabarcoding approach was supported by both visual microscopy and qPCR-based result
Data from: Mining from transcriptomes: 315 single-copy orthologous genes concatenated for the phylogenetic analyses of Orchidaceae
负责人:
关键词:
RNA sequences;Single-copy orthologous genes;Orchidaceae;phylogeny
DOI:
doi:10.5061/dryad.qm30m
摘要:
on morphology and subjective factors. Although more reliable than classic phylogenic analyses, the current methods are based on a few gene markers
Data from: Finding flies in the mushroom soup: host specificity of fungus-associated communities revisited with a novel molecular method
负责人:
关键词:
Fungi;community structure;Ecological interaction networks;Metabarcoding;DNA extraction and purification;Host specificity
DOI:
doi:10.5061/dryad.tf56fm1
摘要:
t molecular methods are suitable for studying this rich natural microcosm. Comparing to previous knowledge based on rearing and morphology-based identifications
Data from: Minimizing polymerase biases in metabarcoding
负责人:
关键词:
Environmental DNA;Metabarcoding;trnL P6 loop;Bias;soil;eDNA
DOI:
doi:10.5061/dryad.k129c
摘要:
simultaneously amplify a short, variable genomic region, or “barcode”, from a broad taxonomic group via the polymerase chain reaction (PCR), usi
Data from: Whole transcriptome RNA-Seq analysis of breast cancer recurrence risk using formalin-fixed paraffin-embedded tumor tissue
负责人:
关键词:
RNA-seq;Next Generation Sequencing;transcriptome;Breast Cancer;Homo Sapiens
DOI:
doi:10.5061/dryad.q760h
摘要:
RNA biomarkers discovered by RT-PCR-based gene expression profiling of archival formalin-fixed paraffin-embedded (FFPE) tissue form the bas
Data from: Benefits and challenges with applying unique molecular identifiers in next generation sequencing to detect low frequency mutations
负责人:
关键词:
DOI:
doi:10.5061/dryad.n6068
摘要:
mutations, as true mutations could be distinguished from PCR errors or sequencing errors based on consensus among reads sharing same index. In an effort
Data from: Sex determination in the wild: a field application of loop-mediated isothermal amplification successfully determines sex across thr
负责人:
Centeno-Cuadros, Alejandro
关键词:
Loop-mediated isothermal amplification CHD-W CHD-Z Birds landscape genetics wildlife management ecological genetics
DOI:
doi:10.5061/dryad.4kr93
摘要:
PCR-based methods are the most common technique for sex determination of birds. Although these methods are fast, easy and accurate, they sti
Data from: DNA metabarcoding for high-throughput monitoring of estuarine macrobenthic communities
负责人:
关键词:
biomonitoring;Benthos;Estuaries;taxonomy;cytochrome c oxidase subunit I (COI);high throughput sequencing (HTS)
DOI:
doi:10.5061/dryad.2686c
摘要:
quently, we compared morphology and metabarcoding-based approaches to determine the species composition from four distinct estuarine sites. Our results indicate tha
Data from: Trace DNA from insect skins: a comparison of five extraction protocols and direct PCR on chironomid pupal exuviae
负责人:
关键词:
Environmental DNA;Chironomidae;DNA Barcoding;insects;species identification;Community Ecology;Invertebrates;COI;Ecological Genetics;Aquatic Macroinvertebrates
DOI:
doi:10.5061/dryad.tf6r4
摘要:
and other cell-based structures might accidentally attach as they are shed. This source of trace DNA can be sufficient for PCR amplification and se
Data from: ITS all right mama: Investigating the formation of chimeric sequences in the ITS2 region by DNA metabarcoding analyses of fungal mock
负责人:
关键词:
DNA metabarcoding;Chimeric sequences;PCR bias;UCHIME;microbial ecology
DOI:
doi:10.5061/dryad.n4cv3
摘要:
The formation of chimeric sequences can create significant methodological bias in PCR-based DNA metabarcoding analyses. During mixed-template

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