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Data from: Swapping birth and death: symmetries and transformations in phylodynamic models
- 负责人：
- DOI：
- doi:10.5061/dryad.57704ft
- 摘要：
- ularly to maximum likelihood and Bayesian inference methods, as well as to model selection.
Data from: Model selection and parameter inference in phylogenetics using nested sampling
- 负责人：
- DOI：
- doi:10.5061/dryad.220d6t5
- 摘要：
- to established methods. We conclude that NS is a competitive and attractive algorithm for phylogenetic inference. An implementation is available as a package
Data from: Multiple refugia and barriers explain the phylogeography of the Valais shrew, Sorex antinorii (Mammalia: Soricomorpha)
- 负责人：
- DOI：
- doi:10.5061/dryad.2jj36325
- 摘要：
- e included in the analysis. The phylogeographical pattern was assessed by Bayesian molecular phylogenetic reconstruction, population genetic analyses
Data from: Are flatfishes (Pleuronectiformes) monophyletic?
- 负责人：
- DOI：
- doi:10.5061/dryad.t749b
- 摘要：
- . The polyphyletic nature of the Pleuronectiformes is often inferred to be the result of weak historical signal and/or artifact of phylogenetic inference due to a bia
Data from: A new Bayesian method for fitting evolutionary models to comparative data with intraspecific variation
- 负责人：
- DOI：
- doi:10.5061/dryad.7fv08k72
- 摘要：
- it takes phenotypic values from individuals and a phylogenetic tree as input, and then samples species means and variances, along with the parameter
Data from: Is morphology really at odds with molecules in estimating fern phylogeny?
- 负责人：
- DOI：
- doi:10.5061/dryad.1009
- 摘要：
- phylogenetic relationships among tracheophytes as found in previous studies utilizing DNA sequence data, but differ in some ways within seed plants and within ferns. We dis
Data from: An efficient independence sampler for updating branches in Bayesian Markov chain Monte Carlo sampling of phylogenetic trees
- 负责人：
- DOI：
- doi:10.5061/dryad.63pm5
- 摘要：
- Sampling tree space is the most challenging aspect of Bayesian phylogenetic inference. The sheer number of alternative topologies is problematic
Data from: A molecular genetic time scale demonstrates Cretaceous origins and multiple diversification rate shifts within the order Galliformes (Aves)
- 负责人：
- DOI：
- doi:10.5061/dryad.p2pn8
- 摘要：
- the Cretaceous–Paleogene (K–Pg; 65.5 Ma) mass extinction. Using Bayesian phylogenetic inference on an alignment spanning 14,539 bp of mitochondrial and nuclear DNA sequence
Data from: A Bayesian method for analyzing lateral gene transfer
- 负责人：
- 关键词：
- Phylogenetics Lateral gene transfer Horizontal gene transfer Gene duplication Gene loss Phylogenomics MCMC Bayesian Reconciliation
- DOI：
- doi:10.5061/dryad.f78r2
- 摘要：
- attention for its potential to transfer pathogenic elements and antibiotic resistance in bacteria, and to transfer pesticide resistance from genetic
Data from: The evolutionary history of Xiphophorus fish and their sexually selected sword: a genome-wide approach using restriction site-associa
- 负责人：
- 关键词：
- pre-existing bias hypothesis;Xiphophorus;phylogenetics;hybridization;RAD sequencing;sexual selection
- DOI：
- doi:10.5061/dryad.728b4
- 摘要：
- of organisms. However, so far few studies have utilized such data for phylogenetic estimations. Here, we use NGS data obtained from genome-wide restriction si
