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Data from: Genealogical working distributions for Bayesian model testing with phylogenetic uncertainty
- 负责人：
- DOI：
- doi:10.5061/dryad.8tm76
- 摘要：
- Marginal likelihood estimates to compare models using Bayes factors frequently accompany Bayesian phylogenetic inference. Approaches to esti
Data from: Probabilistic graphical model representation in phylogenetics
- 负责人：
- DOI：
- doi:10.5061/dryad.nt898
- 摘要：
- software for simulation and statistical inference. Here, we provide an introduction to graphical models for phylogeneticists and extend the standard
Data from: Death is on our side: paleontological data drastically modify phylogenetic hypotheses
- 负责人：
- DOI：
- doi:10.5061/dryad.mp48001
- 摘要：
- iments on empirical data matrices, we show that the inclusion of paleontological data has a remarkable effect in phylogenetic inference. Fossils often have higher levels
Data from: Phylogenetic factor analysis
- 负责人：
- DOI：
- doi:10.5061/dryad.6320t
- 摘要：
- , integrates over missing measurements and incorporates phylogenetic uncertainty with the help of molecular sequences. We develop Gibbs samplers ba
Data from: Assessing parameter identifiability in phylogenetic models using Data Cloning
- 负责人：
- DOI：
- doi:10.5061/dryad.rr6400b4
- 摘要：
- , when applied to phylogenetic inference, DC can be used to study at least two important statistical questions: assessing identifiability of discrete parameter
Data from: Phylogeny of Selaginellaceae: there is value in morphology after all!
- 负责人：
- DOI：
- doi:10.5061/dryad.88fh0
- 摘要：
- . Evolutionary relationships were inferred from both chloroplast (rbcL) and single-copy nuclear gene data (pgiC and SQD1) using a Bayesian inference approach. The morpholog
Data from: Phylogeny and divergence times of lemurs inferred with recent and ancient fossils in the tree
- 负责人：
- DOI：
- doi:10.5061/dryad.51f00
- 摘要：
- for living and extinct taxa are rapidly becoming available. We used two models to infer the phylogeny and divergence times for living and fossil primates
Data from: An integrated pathway for building regional phylogenies for ecological studies
- 负责人：
- DOI：
- doi:10.5061/dryad.2v4h7bv
- 摘要：
- n in the Bayesian tree reconstruction software BEAST2, appropriate for estimating time-calibrated trees and including phylogenetic uncertainty for downstream analyses
Data from: Integrating sequence evolution into probabilistic orthology analysis
- 负责人：
- DOI：
- doi:10.5061/dryad.4r910
- 摘要：
- g species tree, (most commonly performed using the most parsimonious reconciliation, MPR). However, most such phylogenetic orthology methods infer the gene
Data from: Markov-modulated continuous-time Markov chains to identify site- and branch-specific evolutionary variation in BEAST
- 负责人：
- DOI：
- doi:10.5061/dryad.230s5h0
- 摘要：
- all substitution rate) at individual sites to vary across lineages. We implement a general MMM framework in BEAST, a popular Bayesian phylogenetic inference
