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Data from: Effective online Bayesian phylogenetics via sequential Monte Carlo with guided proposals
负责人:
关键词:
phylogenetics;sequential Monte Carlo;Online Inference;Bayesian inference
DOI:
doi:10.5061/dryad.n7n85
摘要:
. Current software packages for Bayesian phylogenetic inference are unable to quickly incorporate new sequences as they become available, making them less use
Data from: Taxon Influence Index: assessing taxon-induced incongruities in phylogenetic inference
负责人:
关键词:
bootstrap support;Taxon Influence;taxon sampling;Tree robustness
DOI:
doi:10.5061/dryad.86137tk6
摘要:
al issue is to quantify the uncertainty of the inference. The posterior probabilities in Bayesian phylogenetic inference and the bootstrap values
Data from: Concordance analysis in mitogenomic phylogenetics
负责人:
关键词:
Hynobiidae;Plethodontidae;Concatenation;mitogenomics;phylogenetics;Bayesian concordance analysis
DOI:
doi:10.5061/dryad.8d3r7
摘要:
y in concatenated mitogenomic phylogenetics. The overall results presented here suggest that Bayesian concordance analysis can serve as an effective explorati
Data from: Detection of implausible phylogenetic inferences using posterior predictive assessment of model fit
负责人:
关键词:
Simulation;Markov chain Monte Carlo;Bayesian;phylogenetic;Posterior Predictive Distribution;Sequence Evolution;model fit
DOI:
doi:10.5061/dryad.nc866
摘要:
rely when attempting to model evolution across massive, diverse datasets. However, not all deficiencies of inference models result in unreliable phylogenetic estimates
Data from: Probabilistic methods surpass parsimony when assessing clade support in phylogenetic analyses of discrete morphological data
负责人:
关键词:
phylogenetic analysis;morphology;Mk Model;parsimony;Bayesian;maximum likelihood
DOI:
doi:10.5061/dryad.8dd39
摘要:
for phylogenetic inference; this has traditionally been analysed using parsimony, the predominance of which is currently challenged by the development of probabilistic
Data from: Assessing combinability of phylogenomic data using Bayes Factors
负责人:
关键词:
Concatenation;marginal likelihood;Bayes factor;Bayes Factor calibration;phylogenetic dissonance;phylogenomics
DOI:
doi:10.5061/dryad.gt81779
摘要:
phylogenetic resolution, it also presents us with new challenges when the phylogenetic signal is confused by differences in the evolutionary histories of sampled
Data from: Phylogenetic inference and divergence dating of snakes using molecules, morphology and fossils: new insights into convergent evoluti
负责人:
关键词:
Total Evidence;limb loss;Bayesian phylogenetics;relaxed clock;Macrostomata;Serpentes;ancestral state reconstruction;Ophidia
DOI:
doi:10.5061/dryad.cm603
摘要:
Bayesian divergence time analyses were used to simultaneously infer the phylogenetic relationships and date the major clades of snakes including sever
Data from: Cryptic genetic diversity is paramount in small-bodied amphibians of the genus Euparkerella (Anura: Craugastoridae) endemic
负责人:
关键词:
Multilocus Species Tree;Euparkerella cochranae;Terrarana;Neotropical;Euparkerella tridactyla;Euparkerella brasiliensis;Amphibia;phylogeny;Miocene;Pliocene;Euparkerella robusta;Pleistocene
DOI:
doi:10.5061/dryad.690jk
摘要:
ng DNA sequence data from one mitochondrial and four nuclear genes coupled with traditional Bayesian phylogenetic reconstruction approaches and more recent coalesce
sed on parsimony and Bayesian inference
负责人:
关键词:
Eusphenodontia;Triassic;Sphenodontia;Rhynchocephalia;taxonomy;phylogenetics;Norian-Rhaetian;Neosphenodontia;Fraserosphenodon latidens;Paleontology;Lepidosauria
DOI:
doi:10.5061/dryad.9n153
摘要:
using both parsimony and Bayesian approaches. Our taxonomic review and both phylogenetic analyses reveal that C. latidens is not refer
Data from: Bayesian estimation of fossil phylogenies and the evolution of early to middle Paleozoic crinoids (Echinodermata)
负责人:
关键词:
DOI:
doi:10.5061/dryad.6hb7j
摘要:
l research programs in biology and paleontology. However, most methods of phylogenetic inference typically used by paleontologists do not accommodate the idiosyncrasies

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