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Data from: The multispecies coalescent over-splits species in the case of geographically widespread taxa
负责人:
关键词:
species delimitation;Lampropeltis triangulum;Lampropeltis gentilis;Species concepts;taxonomy;classification;speciation
DOI:
doi:10.5061/dryad.7hs34mj
摘要:
Many recent species delimitation studies rely exclusively on limited analyses of genetic data analyzed under the multispecies coalescent (MSC) model
Data from: A rapid and scalable method for multilocus species delimitation using Bayesian model comparison and rooted triplets
负责人:
关键词:
Bayesian model comparison;Bacterial species;Bacillus;Multilocus species delimitation;Dynamic programming;present
DOI:
doi:10.5061/dryad.3cb25
摘要:
by the multispecies coalescent. A Bayesian model comparison framework was developed and the best delimitation found by comparing the product of posterior probabilities of al
Data from: Using genomic location and coalescent simulation to investigate gene tree discordance in Medicago L.
负责人:
关键词:
Species tree;incomplete lineage sorting;Gene tree;paralogy;Phylogenetic Incongruence;coalescent simulation;hybridization;principal tree;genomic location
DOI:
doi:10.5061/dryad.85c0s
摘要:
, blocks of linked genes are grouped according to their hybrid history. Existing multispecies coalescent software can then be applied to rec
Data from: Displayed trees do not determine distinguishability under the network multispecies coalescent
负责人:
关键词:
Species tree;Gene tree;maximum likelihood;identifiability;phylogeny;rooted triple;hybridization;quartet
DOI:
doi:10.5061/dryad.t2d38
摘要:
ween species. Probabilistic models using the multispecies coalescent can be used in this framework for likelihood-based inference of both network topologies
Data from: Coestimating reticulate phylogenies and gene trees from multilocus sequence data
负责人:
Nakhleh, Luay
关键词:
Multispecies network coalescent reticulation incomplete lineage sorting phylogenetic network Bayesian inference RJMCMC
DOI:
doi:10.5061/dryad.3h185
摘要:
The multispecies network coalescent (MSNC) is a stochastic process that captures how gene trees grow within the branches of a phylogeneti
Data from: Marginal likelihood estimate comparisons to obtain optimal species delimitations in Silene sect. Cryptoneurae (Caryophyllaceae)
负责人:
关键词:
section Cryptoneurae;Bayes factors;Silene;species delimitation;Multispecies coalescent;Caryophyllaceae;Silene ertekinii sp. nov.
DOI:
doi:10.5061/dryad.nj984
摘要:
Coalescent-based inference of phylogenetic relationships among species takes into account gene tree incongruence due to incomplete lineage sorti
Data from: Microevolutionary processes generate phylogenomic discordance at ancient divergences
负责人:
关键词:
Macroevolution;Coleoptera;Carabidae;Models\/Simulations;Cretaceous;Coalescent Theory;Jurassic;Adephaga;Mammalia;Harpalinae;Angiospermae;Lepidoptera;phylogenetics;Nymphalidae;Cenozoic;Aves;speciation
DOI:
doi:10.5061/dryad.88qf4
摘要:
divergences. I used multispecies coalescent models to determine the impact of stochastic processes on deep phylogenomic histories. Here I show phylogenomic
Data from: A preliminary framework for DNA barcoding, incorporating the multispecies coalescent
负责人:
关键词:
species delimitation;Sarcophaga;incomplete lineage sorting;Bayesian;barcode;coalescent
DOI:
doi:10.5061/dryad.st467
摘要:
of this article is to initiate the development of a framework for “next-gen barcoding”: one that incorporates the multispecies coalescent, but does so by comparing
Data from: Disentangling incomplete lineage sorting and introgression to refine species-tree estimates for Lake Tanganyika cichlid fishes
负责人:
关键词:
species network;adaptive radiation;Cichlidae;introgression
DOI:
doi:10.5061/dryad.62qn5
摘要:
related riverine lineages received genetic material from Cyphotilapiini. We then applied the multispecies coalescent model to estimate the species
Data from: Unravelling species boundaries in the Aspergillus viridinutans complex (section Fumigati): opportunistic human and animal
负责人:
Hubka, Vit
关键词:
interspecies hybrids invasive aspergillosis heterothallic species MAT locus mating type genes multispecies coalescence model sino-orbital aspergillosis scanning electron microscopy soil fungi
DOI:
doi:10.5061/dryad.38889
摘要:
on the multispecies coalescent model (MSC) supported recognition of ten species including one new species. Four species are confirmed op- portunistic pathogens; A. udagawae

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