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Data from: Woody flora types to describe phytogeographic units: an insight along a west–east transect in central Italy
负责人:
关键词:
higher taxon-approach;distribution patterns;Transition zone
DOI:
doi:10.5061/dryad.4qt17
摘要:
a patterns, supported by Mantel and Procrustes tests, confirmed the validity of the higher-taxon approach to analyse woody flora patter
Data from: A preliminary framework for DNA barcoding, incorporating the multispecies coalescent
负责人:
关键词:
species delimitation;Sarcophaga;incomplete lineage sorting;Bayesian;barcode;coalescent
DOI:
doi:10.5061/dryad.st467
摘要:
(e.g., Smith 2005; Will et al. 2005; Rubinoff et al. 2006), attest to this. However, one major shortcoming to the standard barcoding approach is that it assumes
Data from: A long PCR based approach for DNA enrichment prior to next-generation sequencing for systematic studies
负责人:
关键词:
Lupinus leucophylla Douglas ex Lindl.;Abies fraseri (Pursh) Poir;Castilleja linariifolia Benth.;Castilleja covilleana L.F.Hend.;Castilleja elmeri Fernald;Crataegus columbiana Howell;Bartsia inaequalis Benth.;Abies amabilis Douglas ex J.Forbes;Castilleja ortegae Standl.;Abies grandis (Douglas ex D. Don) Lindley;Poa bulbosa L.;Nuphar polysepalum Engelm.;Castilleja pallescens Greenm.;Next-generation sequencing;Universal Chloroplast PCR Primers;Penstemon montanus Greene var idahoensis (Keck) Cronq.;Bromus tectorum L.;Long PCR;Castilleja applegatei Fernald;Capsella bursa-pastoris (L.) Medik.;Castilleja miniata Douglas ex Hook.;Salix scouleriana Barrat ex. Hook.;Chloroplast Enrichment;Alnus rhombifolia Nutt.;Balsamorhiza sagittata (Pursh) Nutt.;Castilleja lineariloba (Benth.) T.I.Chuang & Heckard;Plastome;Castilleja victoriae Fairbarns & J.M.Egger;Castilleja arvensis Cham. & Schltdl.;Lomatium dissectum (Nutt) Mathias & Constance;Castilleja virgata (Domb. ex Wedd.) Edwin;Balsamorhiza hookeri Nutt;Bartsia stricta (Kunth) Benth.;Polygonum douglasii Greene;Castilleja oresbia Greenm.;Angiosperms;Lamourouxia virgata Kunth;Umbellularia californica (Hook. & Arn.) Nutt.;Senecio integerrimus Nutt. var exaltatus (Nutt.) Cronq.
DOI:
doi:10.5061/dryad.kc75n
摘要:
on whether PCR conditions were optimized for a given taxon. To further test our approach, some amplicons were sequenced on an Illumina HiSeq 2000
Data from: Comparing cal3 and other a posteriori time-scaling approaches in a case study with the pterocephaliid trilobites
负责人:
关键词:
time-scaling methods;Pterocephaliidae;dating phylogenies;Cambrian-Ordovician;phylogenetic comparative methods;Trilobita
DOI:
doi:10.5061/dryad.292dd
摘要:
processes, which may be hard to obtain, particularly for sampling. Here, we contrast the use of cal3 and other a posteriori time-scaling approaches
Data from: Accurate inference of tree topologies from multiple sequence alignments using deep learning
负责人:
关键词:
Supervised Machine Learning;convolutional neuronal network;phylogenetics
DOI:
doi:10.5061/dryad.ct2895s
摘要:
ed data. We show that our approach is highly accurate on simulated data, often outperforming traditional methods, and is remarkably robust to bias
Data from: Journeys through discrete-character morphospace: synthesising phylogeny, tempo, and disparity
负责人:
关键词:
Mesozoic;Coelurosauria;morphology;Cladistics;disparity;phylogeny;tempo;ancestors
DOI:
doi:10.5061/dryad.1j5h875
摘要:
five different approaches, two novel to this study, showing that the three pre-existing approaches may contain biases that stem from a different signal
Data from: A comparison between transcriptome sequencing and 16S metagenomics for detection of bacterial pathogens in wildlife
负责人:
关键词:
NGS RNA-Seq 16S metagenomics metabarcoding 454-pyrosequencing MiSeq bacteria rodent-borne zoonoses coinfections pathobiome
DOI:
doi:10.5061/dryad.50125
摘要:
s not been assessed. Here, we compared two NGS approaches, RNA-Sequencing (RNA-Seq) and 16S-metagenomics, assessing their ability to survey neglected zoonotic bacter
Data from: Solution of the Generalized Noah's Ark Problem
负责人:
关键词:
Taxon Selection;biodiversity conservation;Integer Programming;phylogenetic diversity;Noah's Ark Problem;experiments
DOI:
doi:10.5061/dryad.7q804
摘要:
ent taxa are not independent of each other. Computational results are presented to illustrate potentialities of the approach. Near-optimal solutions
Data from: Graph splitting: a graph-based approach for superfamily-scale phylogenetic tree reconstruction
负责人:
关键词:
early evolution;TIM-barrel superfamily;Network analysis;Phylogenetic method;bioinformatics
DOI:
doi:10.5061/dryad.ps0qf4r
摘要:
a protein superfamily-scale phylogenetic tree using a graph-based approach. Evolutionary simulation showed that the GS method can accurately reconstruct
Data from: Phylogenomics of Lophotrochozoa with consideration of systematic error
负责人:
关键词:
Trochozoa Spiralia Mollusca Nemertea Annelida Brachiopoda Phoronida Entoprocta Bryozoa Platyzoa
DOI:
doi:10.5061/dryad.30k4v.1
摘要:
on limited numbers of loci. One region of the animal tree that has been especially difficult to resolve, even with phylogenomic approaches, is relationships

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