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Data from: Phylogenomics of Lophotrochozoa with consideration of systematic error
负责人:
关键词:
Rhyssoplax olivaceus;Lineus lacteus;Novocrania anomala;Boccardia proboscidea;Clymenella torquata;Glottidia pyramidata;Phascolosoma agassizii;saturation;Patella vulgata;Adineta vaga;Leptochiton asellus;Megadasys sp.;Spathoderma clenchi;Schistosoma mansoni;Platyzoa;Brachionus plicatilis;Loxosoma pectinaricola;Paranemertes peregrina;Phenacolepas pulchella;Taenia pisiformis;Ruditapes philippinarum;Sepioteuthis lessoniana;Macellomenia schanderi;Capitella teleta;Phoronis vancouverensis;Pomatoceros lamarckii;Alexandromenia crassa;Prochaetoderma californicum;Entalina tetragona;Symbion americanus;Spiralia;Neomenia carinata;Dosidicus gigas;Alitta virens;Tubulanus polymorphus-Halanych;Nemertea;Cephalothrix linearis;Mollusca;drosophila melanogaster;Laqueus californicus;Crassostrea gigas;Laevipilina hyalina;Macrodasys sp.;Phoronida;Aplysia californica;Mytilus edulis;Hemithiris psittacea;Bryozoa;Pectinaria gouldii;Octopus vulgaris;Brachiopoda;Compositional heterogeneity;Lineus longissimus;Gnathostomula paradoxa;Leptochiton rugatus;Graptacme eborea;Cephalothrix hongkongensis;Lottia gigantea;Nuculana pernula;Helobdella robusta;Priapulus caudatus;Daphnia pulex;Barentsia gracilis;Trochozoa;Malacobdella grossa;Enucula tenuis;Loxosomella cf. vivipara;Crepidula fornicata;Haliotis rufescens;Polyzoa;Nucella lapillus;Pedicellina cernua;Sagitta sp.;Tubulanus polymorphus-Struck;Annelida;Gadila tolmiei;Cerebratulus marginatus;Entoprocta;Villosa lienosa;Bugula neritina;Glycera dibranchiata;Lineus ruber;Sepia esculenta;Solemya velum;Long branch attraction;Schmidtea mediterranea;Pinctada fucata;Phoronis psammophila
DOI:
doi:10.5061/dryad.30k4v
摘要:
on limited numbers of loci. One region of the animal tree that has been especially difficult to resolve, even with phylogenomic approaches, is relationships
Data from: The impact of paralogy on phylogenomic studies - a case study on annelid relationships
负责人:
关键词:
paralogy;phylogenomics;Annelida
DOI:
doi:10.5061/dryad.4js80
摘要:
ediction, and whether this had an impact on the phylogenetic reconstruction using a super-matrix approach. Herein, I tested the impact of paralogous sequences
Data from: Body size correlates with discrete character morphological proxies
负责人:
关键词:
dinosaurs; Principal Coordinate Analysis;morphospace;Macroevolution;discrete characters;Body Size
DOI:
doi:10.5061/dryad.fxpnvx0nx
摘要:
a residual/covariate approach to account for potential correlations with body size.
Data from: In the shadows: phylogenomics and coalescent species delimitation unveil cryptic diversity in a Cerrado endemic lizard (Squamata
负责人:
关键词:
bayesian species delimitation;Anthropocene;Neogene;BPP;Tropiduridae;Tropidurus;Paleocene;neotropics;phylogeography;Tropidurus itambere;Anchored Hybrid Enrichment;cryptic species;Squamata
DOI:
doi:10.5061/dryad.1hs2m
摘要:
ies of phylogenetic methods to reconstruct evolutionary relationships and a coalescent Bayesian species delimitation approach (BPP) to clarify species limits. The BPP result
Data from: Revisiting metazoan phylogeny with genomic sampling of all phyla
负责人:
Laumer, Christopher
关键词:
Phylogenomics Animal phylogeny Compositional bias Taxon sampling Matrix recoding
DOI:
doi:10.5061/dryad.293kp3d
摘要:
ancestor. We also explore matrix construction with an eye towards testing specific relationships; this approach uniquely recovers support for Panarthro
Data from: A simple approach for maximizing the overlap of phylogenetic and comparative data
负责人:
关键词:
data imputation;Embryophyta;phylogenetic comparative method;taxonomy;missing data
DOI:
doi:10.5061/dryad.5d3rq
摘要:
is to swap species in the tree that lack data with ‘phylogenetically equivalent’ species that have data. While this procedure is logically straigh
Data from: Lineage-specific mapping of quantitative trait loci
负责人:
关键词:
DOI:
doi:10.5061/dryad.23r11
摘要:
We present an approach for quantitative trait locus (QTL) mapping, termed "lineage-specific QTL mapping", for inferring allelic changes of QTL
Data from: The Opiliones tree of life: shedding light on harvestmen relationships through transcriptomics
负责人:
关键词:
Arachnida;Cyphophthalmi;Eupnoi;Laniatores;RNAseq;Dyspnoi;phylogenomics
DOI:
doi:10.5061/dryad.fs8kv
摘要:
and PCR-based Sanger approaches to infer their systematic relationships. More recently, two studies utilized transcriptomics-based phylogenomics to explore
Data from: Experimental design in phylogenetics: testing predictions from expected information
负责人:
关键词:
branch lengths;Experimental design;mitochondrial genome;bootstrap support;Gymnophiona;phylogenetic information;rag1;taxon sampling
DOI:
doi:10.5061/dryad.83p1130j
摘要:
. The considerable potential of this approach remains largely unexplored. In an earlier study, we applied Goldman’s method to a problem in the phylogenetics
Data from: A demonstration of unsupervised machine learning in species delimitation
负责人:
关键词:
Paranonychidae;integrative taxonomy;Neogene;variational autoencoders;Metanonychus;Opiliones;Quaternary;ultraconserved elements;t-SNE;Random Forest;Laniatores
DOI:
doi:10.5061/dryad.nj2mg77
摘要:
) for species delimitation in an arachnid taxon with high population genetic structure (Opiliones, Laniatores, Metanonychus). We find that UML approaches successfully cluster

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