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Data from: Coalescent versus concatenation methods and the placement of Amborella as sister to water lilies
- 负责人：
- DOI：
- doi:10.5061/dryad.qb251
- 摘要：
- e topologically identical except with respect to the degree of deep coalescence and branch lengths. Our results collectively suggest that the Amborella al
Data from: Robustness to divergence time underestimation when inferring species trees from estimated gene trees
- 负责人：
- DOI：
- doi:10.5061/dryad.65tn4
- 摘要：
- . We examine why the STEM tree (also called GLASS or Maximum Tree) is less accurate on estimated gene trees by comparing estimated and true coalescence times
Data from: The effect of collective dispersal on the genetic structure of a subdivided population
- 负责人：
- DOI：
- doi:10.5061/dryad.1hf24
- 摘要：
- island model to predict expected coalescence times, genetic diversities and F-statistics. We show that collective dispersal reduces mixing in the system, which
Data from: Ecological speciation in sympatric palms: 4. Demographic analyses support speciation of Howea in the face of high gene flow
- 负责人：
- DOI：
- doi:10.5061/dryad.s3t2qn0
- 摘要：
- d coalescence-based demographic models combined with double digest restriction-site associated DNA sequencing of multiple individuals and provide support
limits and divergence times of montane rattlesnakes (Viperidae: Crotalus)
- 负责人：
- DOI：
- doi:10.5061/dryad.4467407
- 摘要：
- ke accurate phylogenetic inferences. Coalescent-based methods of species tree inference have become common, and concatenation has been shown in simulation
Data from: Detecting hybridization by likelihood calculation of gene tree extra lineages given explicit models
- 负责人：
- Olave, Melisa
- DOI：
- doi:10.5061/dryad.q084s
- 摘要：
- Explanations for gene tree discordance with respect to a species tree are commonly attributed to deep coalescence (al
Data from: Phylogenomic analyses resolve an ancient trichotomy at the base of Ischyropsalidoidea (Arachnida, Opiliones) despite high levels of gene
- 负责人：
- DOI：
- doi:10.5061/dryad.3mr26
- 摘要：
- analytical approaches to explore this succession of ancient diversification events, including concatenated and coalescent-based analyses and maximum likelihood
Data from: Computational performance and statistical accuracy of *BEAST and comparisons with other methods
- 负责人：
- DOI：
- doi:10.5061/dryad.02tf9
- 摘要：
- tree. In comparison, supermatrix concatenation methods assume that gene trees share a single common genealogical history, thereby equating gene coalescence
Data from: Coestimating reticulate phylogenies and gene trees from multilocus sequence data
- 负责人：
- Nakhleh, Luay
- 关键词：
- Multispecies network coalescent reticulation incomplete lineage sorting phylogenetic network Bayesian inference RJMCMC
- DOI：
- doi:10.5061/dryad.3h185
- 摘要：
- ticular, we show that when gene flow occurs, our method accurately estimates the evolutionary histories, coalescence times, and divergence times. Tree
Data from: HyDe: a Python package for genome-scale hybridization detection
- 负责人：
- DOI：
- doi:10.5061/dryad.372sq
- 摘要：
- of gene flow. The theory underlying the detection of hybridization using these site pattern probabilities exploits the relationship between the coalesce
