A control system for controlling a machine for the temperature processing of containers for food products, having a movement element for moving containers to be processed on a movement path along which at least one temperature-processing zone is defined, the temperature-processing zone being divided into sub-zones each having a respective injection assembly for injecting processing fluid on the containers and a respective adjusting assembly for setting the temperature of the injected processing fluid. The control system is provided with a control unit coupled to the adjusting assemblies of the sub-zones for regulating the temperature of the processing fluid by performing a prediction of the output temperature of the containers located on the movement path based on a current operating condition of the machine and a past thermal trend for the containers, and controlling the adjusting assemblies based on the predicted output temperature.
