The present invention provides a microcapsule comprising: (i) a core comprising at least one probiotic, prebiotic or a mixture thereof embedded in a polymer selected from alginate and pectin, (ii) an inner layer surrounding the core comprising at least one probiotic, prebiotic or a mixture thereof embedded in a polymer selected from alginate and pectin, and (iii) an outer layer surrounding the inner layer comprising hydrophobic material having a melting point comprised from 35 to 90 °C, wherein the at least one probiotic or prebiotic comprised in the core is different from the at least one probiotic or prebiotic comprised in the inner layer. The invention also provides methods for the preparation of said microcapsule as well as products comprising the same.