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Data from: Who let the CAT out of the bag? accurately dealing with substitutional heterogeneity in phylogenomic analyses
负责人:
关键词:
site-heterogeneity;Simulation;data partitioning;substitution models;phylogenomics
DOI:
doi:10.5061/dryad.85b2m
摘要:
As phylogenetic datasets have increased in size, site-heterogeneous substitution models such as CAT-F81 and CAT-GTR have been advocated in favor
Data from: Assessing parameter identifiability in phylogenetic models using Data Cloning
负责人:
关键词:
Data Cloning;Bayesian estimation in Phylogenetics;Parameter Identifiability;maximum likelihood
DOI:
doi:10.5061/dryad.rr6400b4
摘要:
The success of model-based methods in phylogenetics has motivated much research aimed at generating new, biologically informative models. This ne
Data from: A unifying comparative phylogenetic framework including traits coevolving across interacting lineages
负责人:
关键词:
Coevolution;comparative phylogenetics;trait evolution;character displacement;linear stochastic differential equations;interspecific interactions
DOI:
doi:10.5061/dryad.52636
摘要:
Models of phenotypic evolution fit to phylogenetic comparative data are widely used to make inferences regarding the tempo and mode
Data from: Competition for hummingbird pollination shapes flower color variation in Andean Solanaceae
负责人:
关键词:
reproductive character displacement;interspecific pollen transfer;signal evolution;phenotypic community structure;color vision;phylogenetic signal
DOI:
doi:10.5061/dryad.36v4b
摘要:
ve to null assemblages. Here we combine morphometric analyses, field surveys, and models of pollinator vision with a species-level phylogeny to test
Data from: Testing for universal common ancestry
负责人:
关键词:
common ancestry;Uca;homology;IO;model selection;independent origins;AIC;tree of life
DOI:
doi:10.5061/dryad.gn376
摘要:
phylogenetic models representing the UCA and the independent origins (IOs) hypotheses (Sober and Steel 2002). In this test, the former is represented by a single
Data from: Permutation tests for phylogenetic comparative analyses of high-dimensional shape data: what you shuffle matters
负责人:
关键词:
phylogenetic comparative method;phylogenetic independent contrasts;Plethodon;phylogenetic generalized least squares;Geometric morphometrics
DOI:
doi:10.5061/dryad.2jv17
摘要:
to circumvent this difficulty. One obtains phylogenetic independent contrasts for all variables, and statistically evaluates the linear model by permuti
Data from: Use of continuous traits can improve morphological phylogenetics
负责人:
关键词:
morphology;Paleontology;Bayesian;phylogenetics;Quantitative Characters
DOI:
doi:10.5061/dryad.40b70
摘要:
in phylogenetic reconstruction may alleviate potential concerns of discrete character model adequacy, while identifying areas that require further study in this area. This study
Data from: Genealogical working distributions for Bayesian model testing with phylogenetic uncertainty
负责人:
关键词:
working distribution;marginal likelihood;MCMC;phylogenetics;Bayes factor;Bayesian inference;coalescent model
DOI:
doi:10.5061/dryad.8tm76
摘要:
Marginal likelihood estimates to compare models using Bayes factors frequently accompany Bayesian phylogenetic inference. Approaches to esti
Data from: Palaeohistological evidence for ancestral high metabolic rate in archosaurs
负责人:
关键词:
phylogenetic eigenvectors;phylogenetic comparative methods;archosaurs;resting metabolic rate;bone histology;vertebrate palaeontology
DOI:
doi:10.5061/dryad.2853k
摘要:
on of metabolic rate has ever been performed on fossils using bone histological features. Moreover, to date, no inference model has included phylogenetic informati

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