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Data from: Assessing among-lineage variability in phylogenetic imputation of functional trait datasets
- 负责人：
- DOI：
- doi:10.5061/dryad.12111
- 摘要：
- h, understanding the limitations of phylogenetic modelling in predicting trait values is critical if we are to use them in subsequent analyses. Previous studies hav
Data from: Species richness and patterns of overdispersion, clustering and randomness shape phylogenetic and functional diversity-area relati
- 负责人：
- DOI：
- doi:10.5061/dryad.0vt4b8gvz
- 摘要：
- ). We controlled for the effect of SR in PD and FD via null models to assess PDARs and FDARs independently of SR and to explore the influence of phylogenetic
Data from: Among-character rate variation distributions in phylogenetic analysis of discrete morphological characters
- 负责人：
- 关键词：
- phylogenetics discrete morphological characters rate heterogeneity Bayesian model selection morphological phylogenetics evolutionary rates among-character rate variation
- DOI：
- doi:10.5061/dryad.067qg
- 摘要：
- Likelihood-based methods are commonplace in phylogenetic systematics. Although much effort has been directed toward likelihood-based models
Data from: Complex models of sequence evolution require accurate estimators as exemplified with the invariable site plus Gamma model
- 负责人：
- DOI：
- doi:10.5061/dryad.4j5c7
- 摘要：
- phylogenetic analyses. The proof that the invariable site plus continuous ? model is identifiable (model parameters can be inferred correctly given enough data) ha
Data from: Modeling central metabolism and energy biosynthesis across microbial life
- 负责人：
- DOI：
- doi:10.5061/dryad.gs51v
- 摘要：
- metabolic models (CMM) representing accurate energy biosynthesis based on a well studied, phylogenetically diverse set of model organisms. We compare these models
Data from: Markov-modulated continuous-time Markov chains to identify site- and branch-specific evolutionary variation in BEAST
- 负责人：
- DOI：
- doi:10.5061/dryad.230s5h0
- 摘要：
- on, we show that MMMs impact phylogenetic tree estimation and can substantially improve model fit compared to standard substitution models. Throug
Data from: Terrace aware data structure for phylogenomic inference from supermatrices
- 负责人：
- DOI：
- doi:10.5061/dryad.v02t3
- 摘要：
- . Here we introduce the phylogenetic terrace aware (PTA) data structure for the efficient analysis under partition models. In the presence of missing data
Data from: Phylogenetic ANOVA: the Expression Variance and Evolution model for quantitative trait evolution
- 负责人：
- 关键词：
- Ornstein-Uhlenbeck model;Plasticity;expression adaptation;population variance;comparative expression
- DOI：
- doi:10.5061/dryad.r122k
- 摘要：
- cessity for a phylogenetic model in comparative expression studies and show the utility of the EVE model to detect expression divergence, diversity, and branch-specific shifts.
Data from: Distinguishing between convergent evolution and violation of the molecular clock for three taxa
- 负责人：
- DOI：
- doi:10.5061/dryad.n8m9c
- 摘要：
- We give a non-technical introduction to convergence-divergence models, a new modeling approach for phylogenetic data that allows for the us
Data from: Phylodynamic model adequacy using posterior predictive simulations
- 负责人：
- DOI：
- doi:10.5061/dryad.65p331m
- 摘要：
- BEAST2 software, that allows assessing the adequacy of phylodynamic models. We illustrate its utility by analysing phylogenetic trees from two viral
