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Data from: A Darwinian uncertainty principle
负责人:
关键词:
Transition rates;ancestral states;phylogeny;Yule and coalescent trees;Evolutionary patterns and processes;Information theory
DOI:
doi:10.5061/dryad.6p55sp3
摘要:
ple information sources. In this framework, we use mathematics and simulations to demonstrate that although each goal can be achieved with high accuracy individual
Data from: Analysis of phylogenomic tree space resolves relationships among marsupial families
负责人:
关键词:
Mammals;tree space;Marsupials;multi-species coalescent;Marsupialia;phylogenomics
DOI:
doi:10.5061/dryad.353q5
摘要:
y in the evolutionary timescale and relationships within the group. Using simulations and a new phylogenomic data set comprising nucleotide sequences of 1550 loci from 18
Data from: Bayesian divergence-time estimation with genome-wide SNP data of sea catfishes (Ariidae) supports Miocene closure of the Panamanian
负责人:
关键词:
Teleosts;Ariidae;molecular clock;fossil record;Dorylinae;SNPs;phylogeny;Miocene;Bayesian inference;Pliocene;RAD sequencing;Pleistocene
DOI:
doi:10.5061/dryad.f8k84
摘要:
populations before the isthmus closure around 3 Ma. Our reanalysis with the multi-species coalescent model shifts all of these divergence times to ages younge
Data from: Whole-genome resequencing uncovers molecular signatures of natural and sexual selection in wild bighorn sheep
负责人:
关键词:
29th century;Genomics\/Proteomics;effective population size;Fitness;molecular evolution;population genomics;selective sweeps;Ovis canadensis;sexual selection;coalescent simulations;Adaptation
DOI:
doi:10.5061/dryad.3f2t2
摘要:
le of strong genomic signatures of selection identified at genes with known function in wild populations of a nonmodel species. Our results also showcase the val
Data from: Species delimitation with ABC and other coalescent-based methods: a test of accuracy with simulations and an empirical examp
负责人:
关键词:
Liolaemus laurenti;divergence;Simulation;gene flow;Liolaemus grosseorum;Liolaemus darwinii;gene trees;Holocene;speciation;Pleistocene
DOI:
doi:10.5061/dryad.4409k652
摘要:
ult of incomplete lineage sorting via the coalescent model, but do not explicitly accommodate gene flow after divergence. Approximate Bayesian Computation (ABC) can incorporate
Data from: Phylodynamic model adequacy using posterior predictive simulations
负责人:
关键词:
Bayesian phylogenetics;Viral evolution;posterior predictive simulation;BEAST2;Phylodynamics;model adequacy
DOI:
doi:10.5061/dryad.65p331m
摘要:
outbreaks of Ebola and H1N1 influenza. The main features of the Ebola data were adequately described by the coalescent exponential-growth model, wherea
Data from: The effect of gene flow on coalescent-based species-tree inference
负责人:
关键词:
Continuous-time Markov Chains;SVDQuartets
DOI:
doi:10.5061/dryad.j11fh
摘要:
for species tree inference, AS- TRAL, MP-EST, and concatenation. The simulations show that ASTRAL, MP-EST, and concatenation can be statistically inconsistent
Data from: Testing for multiple invasion routes and source populations for the invasive brown treesnake (Boiga irregularis) on Guam: implications
负责人:
关键词:
Founder event;invasive species;biological control;Boiga irregularis;phylogeny
DOI:
doi:10.5061/dryad.5c6f6
摘要:
c markers and coalescent-based phylogenetic methods to place the Guam population within the broader phylogeographic context of B. irregularis across its nati

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