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Data from: Assessing the impacts of positive selection on coalescent-based species tree estimation and species delimitation.
- 负责人:
- DOI:
- doi:10.5061/dryad.5v3b5
- 摘要:
- tree distributions and coalescent times conditioned on a given species tree. In this study, we conduct computer simulations to explore the effects of violati
Data from: Heterogeneity in genetic diversity among non-coding loci fails to fit neutral coalescent models of population history
- 负责人:
- DOI:
- doi:10.5061/dryad.nv5v1v59
- 摘要:
- in substitution rates. Using two different coalescent methods to infer models of population history and then simulating neutral genetic diversity under these model
Data from: PSMC (pairwise sequentially Markovian coalescent) analysis of RAD (restriction site associated DNA) sequencing data
- 负责人:
- DOI:
- doi:10.5061/dryad.0618v
- 摘要:
- The pairwise sequentially Markovian coalescent (PSMC) method uses the genome sequence of a single individual to estimate demographic history covering
Data from: Computational performance and statistical accuracy of *BEAST and comparisons with other methods
- 负责人:
- DOI:
- doi:10.5061/dryad.02tf9
- 摘要:
- t concatenation is not a consistent estimator of the species tree. *BEAST, a fully Bayesian implementation of the multispecies coalescent, is popula
Data from: Delimiting species using single-locus data and the Generalized Mixed Yule Coalescent approach: a revised method and evaluati
- 负责人:
- DOI:
- doi:10.5061/dryad.0hv88
- 摘要:
- or evaluated fully against simulations of alternative scenarios of true patterns of population variation and divergence between species. Here, we present important
and late expansion during the Pleistocene
- 负责人:
- DOI:
- doi:10.5061/dryad.8570
- 摘要:
- d mitochondrial DNA (mtDNA) sequence data and coalescent simulations to test two general biogeographic hypothesis related to the effects of Pleistocene climatic fluctuations
Data from: Using genomic location and coalescent simulation to investigate gene tree discordance in Medicago L.
- 负责人:
- DOI:
- doi:10.5061/dryad.85c0s
- 摘要:
- . Here, we propose a stepwise method by which these processes can be discerned using information on genomic location coupled with coalescent simulations
Data from: Estimating the temporal and spatial extent of gene flow among sympatric lizard populations (genus Sceloporus) in the southern Mexican
- 负责人:
- DOI:
- doi:10.5061/dryad.3v55p
- 摘要:
- discordance in sympatric populations of S. spinosus and S. horridus owing to mitochondrial introgression. We used coalescent simulations to differenti
Data from: A new method to scan genomes for introgression in a secondary contact model
- 负责人:
- DOI:
- doi:10.5061/dryad.s5v7b
- 摘要:
- d index of population differentiation, FST, and suggest a simple statistical test for identifying genomic outliers. Extensive computer simulations demonstrate that Gmin has both gre
Data from: Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model
- 负责人:
- DOI:
- doi:10.5061/dryad.3629v
- 摘要:
- , a property that simulations and theory have identified as a likely cause of incongruent phylogenies. However, this incongruence has not yet been demons