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Data from: Assessing the impacts of positive selection on coalescent-based species tree estimation and species delimitation.
负责人:
关键词:
multispecies coalescent model;neutral theory;systematics;population genetics;phylogenetics;Coalescent Theory;Adaptation
DOI:
doi:10.5061/dryad.5v3b5
摘要:
tree distributions and coalescent times conditioned on a given species tree. In this study, we conduct computer simulations to explore the effects of violati
Data from: Heterogeneity in genetic diversity among non-coding loci fails to fit neutral coalescent models of population history
负责人:
关键词:
multilocus;introns;Anas strepera;Neutrality;Holarctic;coalescent;simulations
DOI:
doi:10.5061/dryad.nv5v1v59
摘要:
in substitution rates. Using two different coalescent methods to infer models of population history and then simulating neutral genetic diversity under these model
Data from: PSMC (pairwise sequentially Markovian coalescent) analysis of RAD (restriction site associated DNA) sequencing data
负责人:
关键词:
Pairwise Sequential Markovian Coalescent (PSMC);whole genome sequencing;threespine stickleback;demographic history;RAD sequencing
DOI:
doi:10.5061/dryad.0618v
摘要:
The pairwise sequentially Markovian coalescent (PSMC) method uses the genome sequence of a single individual to estimate demographic history covering
Data from: Computational performance and statistical accuracy of *BEAST and comparisons with other methods
负责人:
关键词:
Concatenation;Bayesian phylogenetics;Gene tree;Primates;Species tree;Pedicularis;Multispecies coalescent;Supermatrix;phylogenomics
DOI:
doi:10.5061/dryad.02tf9
摘要:
t concatenation is not a consistent estimator of the species tree. *BEAST, a fully Bayesian implementation of the multispecies coalescent, is popula
Data from: Delimiting species using single-locus data and the Generalized Mixed Yule Coalescent approach: a revised method and evaluati
负责人:
关键词:
genealogical;species;DNA;neutral;clusters;speciation;coalescent
DOI:
doi:10.5061/dryad.0hv88
摘要:
or evaluated fully against simulations of alternative scenarios of true patterns of population variation and divergence between species. Here, we present important
and late expansion during the Pleistocene
负责人:
关键词:
Pleistocene refugia;Biogeography;phylogeography;Gloydius brevicaudus;Pleistocene
DOI:
doi:10.5061/dryad.8570
摘要:
d mitochondrial DNA (mtDNA) sequence data and coalescent simulations to test two general biogeographic hypothesis related to the effects of Pleistocene climatic fluctuations
Data from: Using genomic location and coalescent simulation to investigate gene tree discordance in Medicago L.
负责人:
关键词:
Species tree;incomplete lineage sorting;Gene tree;paralogy;Phylogenetic Incongruence;coalescent simulation;hybridization;principal tree;genomic location
DOI:
doi:10.5061/dryad.85c0s
摘要:
. Here, we propose a stepwise method by which these processes can be discerned using information on genomic location coupled with coalescent simulations
Data from: Estimating the temporal and spatial extent of gene flow among sympatric lizard populations (genus Sceloporus) in the southern Mexican
负责人:
关键词:
Reptiles;systematics;Sceloporus edwardtaylori;Sceloporus spinosus;phylogeography;hybridization;Sceloporus horridus;Pliocene;Population Genetics - Empirical;Pleistocene
DOI:
doi:10.5061/dryad.3v55p
摘要:
discordance in sympatric populations of S. spinosus and S. horridus owing to mitochondrial introgression. We used coalescent simulations to differenti
Data from: A new method to scan genomes for introgression in a secondary contact model
负责人:
关键词:
gene flow;Gmin;coalescent simulation;introgression
DOI:
doi:10.5061/dryad.s5v7b
摘要:
d index of population differentiation, FST, and suggest a simple statistical test for identifying genomic outliers. Extensive computer simulations demonstrate that Gmin has both gre
Data from: Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model
负责人:
关键词:
Mammals;cds sequences of 447 genes used in the study
DOI:
doi:10.5061/dryad.3629v
摘要:
, a property that simulations and theory have identified as a likely cause of incongruent phylogenies. However, this incongruence has not yet been demons

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