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Data from: In and out of refugia: historical patterns of diversity and demography in the North American Caesar’s mushroom species complex
- 负责人：
- 关键词：
- Fungi Macroevolution Niche Modelling Phylogenetic Theory and Methods Phylogeography Population Genetics - Empirical
- DOI：
- doi:10.5061/dryad.h26v5
- 摘要：
- ny of these dynamic processes and patterns can be inferred through phylogenetic and coalescent methods. In this study, we first delimit species within a gr
Data from: Molecular evolution of key metabolic genes during transitions to C4 and CAM photosynthesis
- 负责人：
- DOI：
- doi:10.5061/dryad.47m18
- 摘要：
- ious intermediates). METHODS: We inferred a phylogeny of 197 individuals from 167 taxa using coalescent-based approaches, and individual gene family trees usi
Data from: Multilocus coalescence analyses support a mtDNA-based phylogeographic history for a widespread Palearctic passerine bird, Sitta europaea
- 负责人：
- DOI：
- doi:10.5061/dryad.nf91079h
- 摘要：
- ones, did not recover the three lineages, which we attribute to recent splitting. Analyses of the 13 introns combined revealed the same three groups
Data from: Whole-genome analyses resolve the phylogeny of flightless birds (Palaeognathae) in the presence of an empirical anomaly zone
- 负责人：
- DOI：
- doi:10.5061/dryad.fj02s0j
- 摘要：
- successive internal branches, consistent with observed patterns of gene tree heterogeneity. Coalescent simulations indicate that the majority of observed
Data from: Concerted versus independent evolution and the search for multiple refugia: comparative phylogeography of four forest beetles
- 负责人：
- DOI：
- doi:10.5061/dryad.54nq349m
- 摘要：
- ng individual organisms as indicators for ecosystem evolution, such as the identification of forest refugia. We used mitochondrial DNA (COI), Bayesian coalescent
Data from: Genealogical working distributions for Bayesian model testing with phylogenetic uncertainty
- 负责人：
- DOI：
- doi:10.5061/dryad.8tm76
- 摘要：
- GSS in a coalescent-based framework. Here, we extend GSS by relaxing the fixed underlying tree topology assumption. To this purpose, we introduce
Data from: Detecting the anomaly zone in species trees and evidence for a misleading signal in higher-level skink phylogeny (Squamata: Scincidae)
- 负责人：
- DOI：
- doi:10.5061/dryad.sf6s9
- 摘要：
- h concatenation and coalescent-based species tree estimation, to locate conflicting topological signal. We then use the unifying principle of the anomaly zone, toge
Data from: Balancing selection and introgression of newt immune-response genes
- 负责人：
- DOI：
- doi:10.5061/dryad.1h48b38
- 摘要：
- in the control genes. Coalescent and forward simulations that explored neutral and BS scenarios under isolation and migration, showed that processes other tha
Data from: Species delimitation with gene flow: a methodological comparison and population genomics approach to elucidate cryptic species boundaries
- 负责人：
- DOI：
- doi:10.5061/dryad.p928v
- 摘要：
- , mitochondrial DNA and genome-wide SNPs to identify putative species boundaries by implementing non-coalescent and coalescent-based SDMs (mPTP, iBPP, BFD
Data from: SimPhy: phylogenomic simulation of gene, locus and species trees
- 负责人：
- DOI：
- doi:10.5061/dryad.707td
- 摘要：
- , and show that it scales extremely well with complex models and/or large trees, being an order of magnitude faster than the most similar program (DLCoal-Sim
