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Data from: HyDe: a Python package for genome-scale hybridization detection
负责人:
关键词:
gene flow;Coalescence;ABBA-BABA;hybridization;phylogenetic invariants
DOI:
doi:10.5061/dryad.372sq
摘要:
of gene flow. The theory underlying the detection of hybridization using these site pattern probabilities exploits the relationship between the coalescent
Data from: Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas
负责人:
关键词:
America;Homo Sapiens;ancient DNA;BEAST;Holocene
DOI:
doi:10.5061/dryad.23cg1
摘要:
extinction rate. To investigate this further, we applied a novel principal components multiple logistic regression test to Bayesian serial coalescent
Data from: Probabilistic species tree distances: implementing the multispecies coalescent to compare species trees within the same model-based
负责人:
关键词:
Multispecies coalescent;Species tree;model comparison;Information theory;phylogenetic distances;phylogenetic networks
DOI:
doi:10.5061/dryad.rh4172f
摘要:
tree models. Multispecies coalescent models (MSC) parameterize the discrete probability distribution of gene trees conditioned upon a species tree with a particular topology and set
Data from: Pathways of cryptic invasion in a fish parasite traced using coalescent analysis and epidemiological survey
负责人:
关键词:
Directionality of migration;Ligula intestinalis;Parasite introduction;Coevolution;Aquaculture;Population split
DOI:
doi:10.5061/dryad.54fk2
摘要:
. Cryptic diversity within an invasive species can obscure invasion patterns and confound proper management measures. The aim of this study is to use coalescent theory
Data from: The effect of collective dispersal on the genetic structure of a subdivided population
负责人:
关键词:
gene flow;population genetics;metapopulation;kin-structured dispersal;population structure;asymmetric dispersal
DOI:
doi:10.5061/dryad.1hf24
摘要:
dispersal have received relatively little attention. Here we develop two-sample coalescent theory that incorporates collective dispersal in a finite
Data from: A coalescent-based estimator of genetic drift, and acoustic divergence in the Pteronotus parnellii species complex
负责人:
关键词:
PST;Pteronotus pusillus;adaptive vs. non-adaptive;Echolocation;Quaternary;FST;phenotypic divergence;isolation-with-migration;Pteronotus portoricensis;Holocene;Pteronotus parnellii;Pleistocene
DOI:
doi:10.5061/dryad.fg53g0j
摘要:
tic drift. Here we derive FST values from multi-locus coalescent isolation-with-migration models, and couple them with estimates of quantitative trait divergence
Data from: The coalescent in boundary-limited range expansions
负责人:
关键词:
Genetic Variation;Coalescent Theory;genetic drift;gene flow;population genetics
DOI:
doi:10.5061/dryad.mk6g1
摘要:
, as driven for instance by global warming. Here, we develop a coalescent model to study the genetic impact of such "boundary-limited" range expansion
Data from: Phylogenetics support an ancient common origin of two scientific icons: Devils Hole and Devils Hole pupfish
负责人:
关键词:
ABBA-BABA;Cyprinodon diabolis;multi-species coalescent;divergence estimates;SNP assays;critically endangered;Cyprinodon nevadensis mionectes;Cyprinodon radiosus;RAD sequencing
DOI:
doi:10.5061/dryad.2bm21
摘要:
genomic subsets and evaluated four historical scenarios using the multispecies coalescent. Our results provide substantial information regardin
Data from: Coalescent species delimitation in milksnakes (genus Lampropeltis) and impacts on phylogenetic comparative analyses
负责人:
关键词:
gene-tree\/species-tree discordance;Divergence-time estimation;mtDNA introgression;Pleistocene diversification;Lampropeltis;Lampropeltini;Diversification rates
DOI:
doi:10.5061/dryad.420h7
摘要:
timation of the Lampropeltis phylogeny and comparative analyses with respect to the timing of diversification. Coalescent species delimitation indicates that L. triangulum
Data from: Target capture and massively parallel sequencing of ultraconserved elements for comparative studies at shallow evolutionary time scales
负责人:
关键词:
Next-generation sequencing;Coalescent Theory;isolation-with-migration;SNPs;Birds;massively parallel sequencing;Avian
DOI:
doi:10.5061/dryad.qm4j1
摘要:
tree construction, coalescent modeling, and species delimitation, and we found that the five co-distributed species exhibited discordant phylogeographic histories

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