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Data from: Robust design for coalescent model inference
负责人:
关键词:
population genetic inference;structured coalescent;Experimental design;sequential Markovian coalescent;Coalescent Theory;skyline models
DOI:
doi:10.5061/dryad.n7rm21c
摘要:
ng models, this theorem may form the basis of an experimental design paradigm for coalescent inference.
Data from: Assessing the impacts of positive selection on coalescent-based species tree estimation and species delimitation.
负责人:
关键词:
multispecies coalescent model;neutral theory;systematics;population genetics;phylogenetics;Coalescent Theory;Adaptation
DOI:
doi:10.5061/dryad.5v3b5
摘要:
The assumption of strictly neutral evolution is fundamental to the multispecies coalescent model and permits the derivation of gene
Data from: Sweepstake evolution revealed by population-genetic analysis of copy-number alterations in single genomes of breast cancer
负责人:
关键词:
molecular evolution;Single-cell sequencing;Coalescent Theory;bioinformatics;Cancer genomics;Copy-number alteration
DOI:
doi:10.5061/dryad.71jp0
摘要:
rated by simple stochastic processes. A non-standard type of coalescent theory – the multiple-merger coalescent model – aided by approximate Bayes
Data from: Testing hypotheses for genealogical discordance in a rainforest lizard
负责人:
关键词:
Reptiles;Saproscincus basiliscus;phylogeography;hybridization;Population Genetics - Theoretical;Saproscincus lewisi;Population Genetics - Empirical
DOI:
doi:10.5061/dryad.dn0m4
摘要:
coalescent stochasticity or introgression. In this study, we present a strong case of mito-nuclear genealogical discordance in the Australian rainforest lizard
Data from: Using genomic location and coalescent simulation to investigate gene tree discordance in Medicago L.
负责人:
关键词:
Species tree;incomplete lineage sorting;Gene tree;paralogy;Phylogenetic Incongruence;coalescent simulation;hybridization;principal tree;genomic location
DOI:
doi:10.5061/dryad.85c0s
摘要:
. Here, we propose a stepwise method by which these processes can be discerned using information on genomic location coupled with coalescent
Data from: Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model
负责人:
关键词:
Mammals;cds sequences of 447 genes used in the study
DOI:
doi:10.5061/dryad.3629v
摘要:
and taxa, which produced strongly conflicting topologies. In contrast, the coalescent methods, which accommodate gene tree heterogeneity, yield a phylogeny
Data from: A preliminary framework for DNA barcoding, incorporating the multispecies coalescent
负责人:
关键词:
species delimitation;Sarcophaga;incomplete lineage sorting;Bayesian;barcode;coalescent
DOI:
doi:10.5061/dryad.st467
摘要:
incorporate coalescent theory into the analysis of species trees and species delimitation (Fujita et al. 2012) and are conveniently accessible as software
Data from: Microevolutionary processes generate phylogenomic discordance at ancient divergences
负责人:
关键词:
Macroevolution;Coleoptera;Carabidae;Models\/Simulations;Cretaceous;Coalescent Theory;Jurassic;Adephaga;Mammalia;Harpalinae;Angiospermae;Lepidoptera;phylogenetics;Nymphalidae;Cenozoic;Aves;speciation
DOI:
doi:10.5061/dryad.88qf4
摘要:
divergences. I used multispecies coalescent models to determine the impact of stochastic processes on deep phylogenomic histories. Here I show phylogenomic
Data from: Coalescent-based species tree inference from gene tree topologies under incomplete lineage sorting by maximum likelihood
负责人:
关键词:
species tree estimation;Coalescent Theory;phylogenetics;maximum likelihood;incomplete lineage sorting
DOI:
doi:10.5061/dryad.240h7g8r
摘要:
tree), which can complicate the inference of phylogenies. In this paper, I present a new coalescent-based algorithm for species tree inference

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