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Data from: Exploring the power of Bayesian birth-death skyline models to detect mass extinction events from phylogenies with only extant taxa
- 负责人：
- DOI：
- doi:10.5061/dryad.qv10c62
- 摘要：
- with the single-pulse Bayesian model, CoMET, showed a similar frequency of Type II error and neither model exhibited Type I error. However, while CoMET per
Data from: An efficient independence sampler for updating branches in Bayesian Markov chain Monte Carlo sampling of phylogenetic trees
- 负责人：
- DOI：
- doi:10.5061/dryad.63pm5
- 摘要：
- Sampling tree space is the most challenging aspect of Bayesian phylogenetic inference. The sheer number of alternative topologies is problematic
sed on parsimony and Bayesian inference
- 负责人：
- DOI：
- doi:10.5061/dryad.9n153
- 摘要：
- using both parsimony and Bayesian approaches. Our taxonomic review and both phylogenetic analyses reveal that C. latidens is not refer
Data from: Joint reconstruction of divergence times and life-history evolution in placental mammals using a phylogenetic covariance model
- 负责人：
- DOI：
- doi:10.5061/dryad.tt28qk6f
- 摘要：
- -history traits and substitution rates could be used as an additional source of information. In this direction, a Bayesian framework for jointly reconstructing rates, traits, and dates
Data from: Detection of implausible phylogenetic inferences using posterior predictive assessment of model fit
- 负责人：
- DOI：
- doi:10.5061/dryad.nc866
- 摘要：
- irely when attempting to model evolution across massive, diverse datasets. However, not all deficiencies of inference models result in unreliable phylogenetic estimates
Data from: Bayesian tests of topology hypotheses with an example from diving beetles
- 负责人：
- DOI：
- doi:10.5061/dryad.s631d
- 摘要：
- We review Bayesian approaches to model testing in general and to the assessment of topological hypotheses in particular. We show that the standard
Data from: A Bayesian method for analyzing lateral gene transfer
- 负责人：
- 关键词：
- Bayesian Lateral gene transfer Horizontal gene transfer Gene duplication Gene loss Phylogenetics Phylogenomics MCMC Reconciliation
- DOI：
- doi:10.5061/dryad.f78r2
- 摘要：
- al remain debated. We present a Bayesian MCMC-based method that integrates gene duplication, gene loss, LGT, and sequence evolution, and apply the method
limits and divergence times of montane rattlesnakes (Viperidae: Crotalus)
- 负责人：
- DOI：
- doi:10.5061/dryad.4467407
- 摘要：
- ke accurate phylogenetic inferences. Coalescent-based methods of species tree inference have become common, and concatenation has been shown in si
Data from: Model selection and parameter inference in phylogenetics using nested sampling
- 负责人：
- DOI：
- doi:10.5061/dryad.220d6t5
- 摘要：
- Bayesian inference methods rely on numerical algorithms for both model selection and parameter inference. In general, these algorithms require
Data from: Inferring heterogeneous evolutionary processes through time: from sequence substitution to phylogeography
- 负责人：
- DOI：
- doi:10.5061/dryad.qp747
- 摘要：
- in a Bayesian inference framework that offers great modeling flexibility in drawing inference about any discrete data type characterized as a continuous-time Markov chain
